Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019423.1 Corchorus olitorius cultivar O-4 contig19456, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  68985

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2131--2239
55
2.0
55
96
0
200
42
9
11
36
1.74
3156--3197
20
2.0
20
86
9
57
78
4
7
9
1.08
3296--3341
20
2.3
19
82
10
56
6
36
0
56
1.25
7097--7173
12
6.3
12
68
19
52
41
28
7
22
1.81
7129--7179
25
2.0
25
100
0
102
41
27
7
23
1.82
15014--15039
12
2.2
12
100
0
52
30
7
7
53
1.57
15215--15474
138
1.9
138
97
0
493
24
14
21
40
1.90
15458--15506
16
3.1
16
100
0
98
32
6
18
42
1.75
16101--16130
14
2.2
14
94
5
53
6
6
3
83
0.90
16415--16444
15
1.9
16
93
6
53
60
26
10
3
1.45
18390--18423
18
1.9
17
88
5
50
20
5
20
52
1.67
46006--46040
18
1.9
18
88
0
52
11
8
34
45
1.71
66729--66780
26
2.0
26
96
0
95
25
5
15
53
1.63
67877--67963
39
2.2
39
83
0
111
45
14
4
34
1.66
67957--68839
343
2.6
333
81
9
1018
37
15
13
32
1.87

Tables:   1

The End!