Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019426.1 Corchorus olitorius cultivar O-4 contig19459, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  52551

Tables:   1   

This is table  1  of  1  ( 20 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
206--1621
333
4.3
332
83
4
1535
36
14
14
33
1.87
1872--3259
333
4.2
333
82
6
1341
37
14
14
34
1.87
4843--4870
2
14.0
2
100
0
56
50
0
0
50
1.00
6331--6427
49
2.0
49
91
0
158
26
30
10
31
1.90
6380--6533
69
2.2
69
96
0
281
21
33
8
37
1.84
6273--6496
118
1.9
118
93
0
385
24
33
10
32
1.89
7095--7218
55
2.2
56
82
7
142
50
6
22
20
1.70
7187--7232
23
2.0
23
86
0
65
45
8
23
21
1.80
7598--8216
287
2.2
285
93
2
1071
32
13
18
35
1.90
8234--8312
35
2.3
35
97
0
149
17
24
15
43
1.87
10348--10773
206
2.1
207
88
3
644
37
15
18
29
1.91
11455--12512
456
2.3
456
85
1
1404
29
27
23
19
1.98
11455--12512
228
4.6
228
86
1
1242
29
27
23
19
1.98
16714--16750
19
1.9
19
100
0
74
16
32
13
37
1.87
32269--32325
28
2.1
26
87
6
78
43
12
14
29
1.81
32291--32344
29
1.9
29
88
7
85
53
7
14
24
1.66
34969--35037
32
2.2
32
86
0
93
21
24
26
27
1.99
37817--37930
58
2.0
58
92
0
192
36
17
17
28
1.93
40892--41040
73
2.0
73
92
0
244
30
8
22
38
1.83
44001--44229
114
2.0
114
88
1
343
27
18
14
38
1.91

Tables:   1

The End!