Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019427.1 Corchorus olitorius cultivar O-4 contig19460, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 161857
ACGTcount: A:0.32, C:0.18, G:0.17, T:0.32
Found at i:22189 original size:6 final size:6
Alignment explanation
Indices: 22178--22207 Score: 60
Period size: 6 Copynumber: 5.0 Consensus size: 6
22168 GAATTTATTG
22178 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
1 TTTCTT TTTCTT TTTCTT TTTCTT TTTCTT
22208 AATTCATGAT
Statistics
Matches: 24, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
6 24 1.00
ACGTcount: A:0.00, C:0.17, G:0.00, T:0.83
Consensus pattern (6 bp):
TTTCTT
Found at i:29846 original size:78 final size:78
Alignment explanation
Indices: 29757--29918 Score: 288
Period size: 78 Copynumber: 2.1 Consensus size: 78
29747 TAGATTTATA
* *
29757 ATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTAGAACTATTTTATT
1 ATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTAGAACTATTTCAGT
29822 TTACCATTTTACT
66 TTACCATTTTACT
* *
29835 ATTTTACTCAACTAAAAACTCTATTTTTATTTGATTAAATCTAATATCTTTATAACTATTTCAGT
1 ATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTAGAACTATTTCAGT
29900 TTACCATTTTACT
66 TTACCATTTTACT
29913 ATTTTA
1 ATTTTA
29919 AATAGAAAAC
Statistics
Matches: 80, Mismatches: 4, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
78 80 1.00
ACGTcount: A:0.34, C:0.14, G:0.02, T:0.50
Consensus pattern (78 bp):
ATTTTACTCAACTAAAAACTCTATTTTTATTTAATTAAATCTAATATCTTTAGAACTATTTCAGT
TTACCATTTTACT
Found at i:31036 original size:14 final size:13
Alignment explanation
Indices: 31000--31038 Score: 51
Period size: 14 Copynumber: 2.9 Consensus size: 13
30990 TATATATTAG
31000 AATTTTTTAAATA
1 AATTTTTTAAATA
* *
31013 TATTTCTTAAATGA
1 AATTTTTTAAAT-A
31027 AATTTTTTAAAT
1 AATTTTTTAAAT
31039 TTTACAATTT
Statistics
Matches: 21, Mismatches: 4, Indels: 1
0.81 0.15 0.04
Matches are distributed among these distances:
13 10 0.48
14 11 0.52
ACGTcount: A:0.41, C:0.03, G:0.03, T:0.54
Consensus pattern (13 bp):
AATTTTTTAAATA
Found at i:36139 original size:40 final size:40
Alignment explanation
Indices: 36095--36176 Score: 119
Period size: 40 Copynumber: 2.0 Consensus size: 40
36085 AGTTGTGTTT
* * * *
36095 AATAGATTCATCTGAAATCCAGTTCTGTCGAATTCAAATG
1 AATAGATTAATCTGAAAGCCAATTCTGTCGAACTCAAATG
*
36135 AATAGATTAATCTGAAAGCCAATTGTGTCGAACTCAAATG
1 AATAGATTAATCTGAAAGCCAATTCTGTCGAACTCAAATG
36175 AA
1 AA
36177 GAATAATTTT
Statistics
Matches: 37, Mismatches: 5, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
40 37 1.00
ACGTcount: A:0.39, C:0.16, G:0.16, T:0.29
Consensus pattern (40 bp):
AATAGATTAATCTGAAAGCCAATTCTGTCGAACTCAAATG
Found at i:36234 original size:12 final size:12
Alignment explanation
Indices: 36219--36243 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36209 TTATGCATTT
36219 ATTTACCAAGTA
1 ATTTACCAAGTA
36231 ATTTACCAAGTA
1 ATTTACCAAGTA
36243 A
1 A
36244 AAAAGAATAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.44, C:0.16, G:0.08, T:0.32
Consensus pattern (12 bp):
ATTTACCAAGTA
Found at i:36459 original size:21 final size:22
Alignment explanation
Indices: 36433--36477 Score: 65
Period size: 21 Copynumber: 2.1 Consensus size: 22
36423 AGGAACTGAA
36433 TTGCTAAATACCGCCC-CCCTT
1 TTGCTAAATACCGCCCTCCCTT
**
36454 TTGCTACTTACCGCCCTCCCTT
1 TTGCTAAATACCGCCCTCCCTT
36476 TT
1 TT
36478 TACACCTTTT
Statistics
Matches: 21, Mismatches: 2, Indels: 1
0.88 0.08 0.04
Matches are distributed among these distances:
21 14 0.67
22 7 0.33
ACGTcount: A:0.13, C:0.42, G:0.09, T:0.36
Consensus pattern (22 bp):
TTGCTAAATACCGCCCTCCCTT
Found at i:36592 original size:12 final size:12
Alignment explanation
Indices: 36577--36601 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
36567 CAATCTTGAA
36577 GAAAATCATGTC
1 GAAAATCATGTC
36589 GAAAATCATGTC
1 GAAAATCATGTC
36601 G
1 G
36602 GATTTTGTAA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.40, C:0.16, G:0.20, T:0.24
Consensus pattern (12 bp):
GAAAATCATGTC
Found at i:36713 original size:11 final size:11
Alignment explanation
Indices: 36688--36725 Score: 53
Period size: 11 Copynumber: 3.6 Consensus size: 11
36678 CCAAGACTCC
36688 AATTATTTTTT
1 AATTATTTTTT
36699 --TTATTTTTT
1 AATTATTTTTT
*
36708 AATTATTATTT
1 AATTATTTTTT
36719 AATTATT
1 AATTATT
36726 AATTATTATT
Statistics
Matches: 24, Mismatches: 1, Indels: 4
0.83 0.03 0.14
Matches are distributed among these distances:
9 9 0.38
11 15 0.62
ACGTcount: A:0.29, C:0.00, G:0.00, T:0.71
Consensus pattern (11 bp):
AATTATTTTTT
Found at i:36726 original size:11 final size:11
Alignment explanation
Indices: 36699--36742 Score: 54
Period size: 11 Copynumber: 4.0 Consensus size: 11
36689 ATTATTTTTT
*
36699 TTATTTTTTAA
1 TTATTATTTAA
36710 TTATTATTTAA
1 TTATTATTTAA
*
36721 TTATTAATT-A
1 TTATTATTTAA
36731 TTATTAATTTAA
1 TTATT-ATTTAA
36743 ATTGTTATTA
Statistics
Matches: 28, Mismatches: 3, Indels: 3
0.82 0.09 0.09
Matches are distributed among these distances:
10 6 0.21
11 21 0.75
12 1 0.04
ACGTcount: A:0.36, C:0.00, G:0.00, T:0.64
Consensus pattern (11 bp):
TTATTATTTAA
Found at i:36727 original size:7 final size:7
Alignment explanation
Indices: 36712--36783 Score: 51
Period size: 7 Copynumber: 10.1 Consensus size: 7
36702 TTTTTTAATT
36712 ATTATTTA
1 ATTA-TTA
36720 ATTATTA
1 ATTATTA
36727 ATTATT-
1 ATTATTA
36733 ATTAATTTAA
1 ATT-A-TT-A
*
36743 ATTGTT-
1 ATTATTA
36749 ATTATTA
1 ATTATTA
36756 ATTA-TA
1 ATTATTA
*
36762 ATTAATA
1 ATTATTA
*
36769 ATAATTA
1 ATTATTA
*
36776 ATAATTA
1 ATTATTA
36783 A
1 A
36784 AAAACAAAAA
Statistics
Matches: 54, Mismatches: 4, Indels: 13
0.76 0.06 0.18
Matches are distributed among these distances:
6 14 0.26
7 29 0.54
8 8 0.15
10 3 0.06
ACGTcount: A:0.46, C:0.00, G:0.01, T:0.53
Consensus pattern (7 bp):
ATTATTA
Found at i:36735 original size:10 final size:10
Alignment explanation
Indices: 36706--36782 Score: 54
Period size: 10 Copynumber: 8.0 Consensus size: 10
36696 TTTTTATTTT
36706 TTAATTATTA
1 TTAATTATTA
*
36716 TT--TAATTA
1 TTAATTATTA
36724 TTAATTATTA
1 TTAATTATTA
*
36734 TTAATT-TAAA
1 TTAATTAT-TA
*
36744 TT-GTTATTA
1 TTAATTATTA
*
36753 TTAATTATAA
1 TTAATTATTA
* *
36763 TTAATAATAA
1 TTAATTATTA
*
36773 TTAATAATTA
1 TTAATTATTA
36783 AAAAACAAAA
Statistics
Matches: 53, Mismatches: 9, Indels: 10
0.74 0.12 0.14
Matches are distributed among these distances:
8 7 0.13
9 6 0.11
10 40 0.75
ACGTcount: A:0.44, C:0.00, G:0.01, T:0.55
Consensus pattern (10 bp):
TTAATTATTA
Found at i:36846 original size:33 final size:33
Alignment explanation
Indices: 36803--37000 Score: 240
Period size: 33 Copynumber: 6.0 Consensus size: 33
36793 AATAACCGGT
* *
36803 GCCAT-GTCATGCCGTCCAAGGAAGGTGGCACC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACC
* * *
36835 GCCATGGTCATGCCGAACTAGGAGGGCGGCACC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACC
* * *
36868 GCCATGGTCATGCCGACCTAGGAGGGCGGCATC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACC
* *
36901 GCCATGGTCATGTCGCCCAAGGAGGGTGGCACC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACC
36934 GCCATGGTCATGCC-ACCCAAGGAGGGTGGCACC
1 GCCATGGTCATGCCGA-CCAAGGAGGGTGGCACC
* * *
36967 GCCATAGTCATGCCGCCCTAGGAGGGCT-GCACC
1 GCCATGGTCATGCCGACCAAGGAGGG-TGGCACC
37000 G
1 G
37001 GGTTATTTTT
Statistics
Matches: 145, Mismatches: 17, Indels: 7
0.86 0.10 0.04
Matches are distributed among these distances:
32 5 0.03
33 139 0.96
34 1 0.01
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (33 bp):
GCCATGGTCATGCCGACCAAGGAGGGTGGCACC
Found at i:36908 original size:66 final size:66
Alignment explanation
Indices: 36803--37000 Score: 265
Period size: 66 Copynumber: 3.0 Consensus size: 66
36793 AATAACCGGT
* * **
36803 GCCAT-GTCATGCCGTCCAAGGAAGGTGGCACCGCCATGGTCATGCCGAACTAGGAGGGCGGCAC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACCGCCATGGTCATGCCGCCCTAGGAGGGCGGCAC
36867 C
66 C
* * * * * *
36868 GCCATGGTCATGCCGACCTAGGAGGGCGGCATCGCCATGGTCATGTCGCCCAAGGAGGGTGGCAC
1 GCCATGGTCATGCCGACCAAGGAGGGTGGCACCGCCATGGTCATGCCGCCCTAGGAGGGCGGCAC
36933 C
66 C
* *
36934 GCCATGGTCATGCC-ACCCAAGGAGGGTGGCACCGCCATAGTCATGCCGCCCTAGGAGGGCTGCA
1 GCCATGGTCATGCCGA-CCAAGGAGGGTGGCACCGCCATGGTCATGCCGCCCTAGGAGGGCGGCA
36998 CC
65 CC
37000 G
1 G
37001 GGTTATTTTT
Statistics
Matches: 113, Mismatches: 18, Indels: 3
0.84 0.13 0.02
Matches are distributed among these distances:
65 6 0.05
66 107 0.95
ACGTcount: A:0.20, C:0.32, G:0.34, T:0.14
Consensus pattern (66 bp):
GCCATGGTCATGCCGACCAAGGAGGGTGGCACCGCCATGGTCATGCCGCCCTAGGAGGGCGGCAC
C
Found at i:36979 original size:99 final size:98
Alignment explanation
Indices: 36803--36993 Score: 285
Period size: 99 Copynumber: 1.9 Consensus size: 98
36793 AATAACCGGT
* *
36803 GCCATGTCATGCCGTCCAAGGAAGGTGGCACCGCCATGGTCATGCCGAACTAGGAGGGCGGCACC
1 GCCATGTCATGCCGCCCAAGGAAGGTGGCACCGCCATGGTCATGCCGAACAAGGAGGGCGGCACC
*
36868 GCCATGGTCATGCCGACCTAGGAGGGCGGCATC
66 GCCATAGTCATGCCGACCTAGGAGGGCGGCATC
* * * *
36901 GCCATGGTCATGTCGCCCAAGGAGGGTGGCACCGCCATGGTCATGCC-ACCCAAGGAGGGTGGCA
1 GCCAT-GTCATGCCGCCCAAGGAAGGTGGCACCGCCATGGTCATGCCGA-ACAAGGAGGGCGGCA
*
36965 CCGCCATAGTCATGCCGCCCTAGGAGGGC
64 CCGCCATAGTCATGCCGACCTAGGAGGGC
36994 TGCACCGGGT
Statistics
Matches: 83, Mismatches: 8, Indels: 3
0.88 0.09 0.03
Matches are distributed among these distances:
98 6 0.07
99 77 0.93
ACGTcount: A:0.20, C:0.31, G:0.35, T:0.14
Consensus pattern (98 bp):
GCCATGTCATGCCGCCCAAGGAAGGTGGCACCGCCATGGTCATGCCGAACAAGGAGGGCGGCACC
GCCATAGTCATGCCGACCTAGGAGGGCGGCATC
Found at i:38779 original size:47 final size:45
Alignment explanation
Indices: 38711--38887 Score: 273
Period size: 45 Copynumber: 3.9 Consensus size: 45
38701 ACTTCATTGG
** * *
38711 TAATTGTGGTACTCAAACTTAATTTGTGTTTGAACTGGGTTTTGA
1 TAATTGTGGTACTCAAACTTAATTTGTGACTGAACTGGATGTTGA
*
38756 TAATTGTAGTACTCAAAAACTTAATTTGTGACTGAACTGGATGTTGA
1 TAATTGTGGTACTC--AAACTTAATTTGTGACTGAACTGGATGTTGA
38803 TAATTGTGGTACTCAAACTTAATTTGTGACTGAACTGGATGTTGA
1 TAATTGTGGTACTCAAACTTAATTTGTGACTGAACTGGATGTTGA
* *
38848 TAATTGTGGTACTCAAGCTTAATTTGTGACTGAATTGGAT
1 TAATTGTGGTACTCAAACTTAATTTGTGACTGAACTGGAT
38888 TTTGTTACCC
Statistics
Matches: 122, Mismatches: 8, Indels: 4
0.91 0.06 0.03
Matches are distributed among these distances:
45 82 0.67
47 40 0.33
ACGTcount: A:0.29, C:0.10, G:0.21, T:0.40
Consensus pattern (45 bp):
TAATTGTGGTACTCAAACTTAATTTGTGACTGAACTGGATGTTGA
Found at i:41379 original size:19 final size:19
Alignment explanation
Indices: 41355--41395 Score: 82
Period size: 19 Copynumber: 2.2 Consensus size: 19
41345 AGCTATTACA
41355 TTCTACACAGAAGATGATG
1 TTCTACACAGAAGATGATG
41374 TTCTACACAGAAGATGATG
1 TTCTACACAGAAGATGATG
41393 TTC
1 TTC
41396 CTTATTTGCG
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
19 22 1.00
ACGTcount: A:0.34, C:0.17, G:0.20, T:0.29
Consensus pattern (19 bp):
TTCTACACAGAAGATGATG
Found at i:41967 original size:38 final size:38
Alignment explanation
Indices: 41924--42042 Score: 143
Period size: 38 Copynumber: 3.1 Consensus size: 38
41914 AGTTGTTTTT
*
41924 AATAGATTAATCTAAAGTCCTCAGTTGTGTCGAATTCA
1 AATAGATTAATCTGAAGTCCTCAGTTGTGTCGAATTCA
* *
41962 AATAGATTAATTTGAAGTCCTCAGTTGTGTCGAATTTAAA
1 AATAGATTAATCTGAAGTCCTCAGTTGTGTCGAA-TT-CA
* *
42002 TGAATAGATTAATCTGAAG-GC-CAATTGTGTCGAATTCA
1 --AATAGATTAATCTGAAGTCCTCAGTTGTGTCGAATTCA
42040 AAT
1 AAT
42043 GAAGAATAAT
Statistics
Matches: 70, Mismatches: 7, Indels: 10
0.80 0.08 0.11
Matches are distributed among these distances:
36 3 0.04
38 33 0.47
39 4 0.06
40 13 0.19
41 1 0.01
42 16 0.23
ACGTcount: A:0.35, C:0.13, G:0.18, T:0.34
Consensus pattern (38 bp):
AATAGATTAATCTGAAGTCCTCAGTTGTGTCGAATTCA
Found at i:43961 original size:92 final size:89
Alignment explanation
Indices: 43795--44057 Score: 400
Period size: 92 Copynumber: 2.9 Consensus size: 89
43785 GTGAGGTTTA
* ** * * * *
43795 GAACCTGTTCTTGTTGGACATTGTATTGATTTTATGTCAATTTGTTGATAATTGCTGTACTCGAA
1 GAACTTGTTCTTGTTTAACATTGTATTGATTTGATGTCACTTTATTGATAATTGCTGTACTCAAA
43860 CTTAATTTGTGACTGAAACTGGTT
66 CTTAATTTGTGACTGAAACTGGTT
*
43884 GAACTTGTTCTTGTTTAACATTTTATTGATTTGATGTCACTTTCTTATTGATAATTGCTGTACTC
1 GAACTTGTTCTTGTTTAACATTGTATTGATTTGATGTCAC--T-TTATTGATAATTGCTGTACTC
43949 AAACTTAATTTGTGACTGAAACTGGTT
63 AAACTTAATTTGTGACTGAAACTGGTT
* *
43976 GAACTTGTTCTTGTTTAACATTGTATTGATTTGATTTCACTTTATTGATAATTGCTTTACTCAAA
1 GAACTTGTTCTTGTTTAACATTGTATTGATTTGATGTCACTTTATTGATAATTGCTGTACTCAAA
*
44041 CCTAATTTGTGACTGAA
66 CTTAATTTGTGACTGAA
44058 CTTGATTTTG
Statistics
Matches: 159, Mismatches: 12, Indels: 6
0.90 0.07 0.03
Matches are distributed among these distances:
89 73 0.46
90 1 0.01
91 1 0.01
92 84 0.53
ACGTcount: A:0.25, C:0.13, G:0.16, T:0.46
Consensus pattern (89 bp):
GAACTTGTTCTTGTTTAACATTGTATTGATTTGATGTCACTTTATTGATAATTGCTGTACTCAAA
CTTAATTTGTGACTGAAACTGGTT
Found at i:54772 original size:27 final size:24
Alignment explanation
Indices: 54720--54790 Score: 99
Period size: 27 Copynumber: 2.9 Consensus size: 24
54710 TAAATGAAAG
*
54720 TGCATAACTAAATGACTT-CAAAA
1 TGCATAACTAAATGACTTGTAAAA
54743 TGCATAACTAAATGACTTGTAGTATAA
1 TGCATAACTAAATGACTTGTA--A-AA
54770 TGCATAACTAAATGACTTGTA
1 TGCATAACTAAATGACTTGTA
54791 CTATTAATTA
Statistics
Matches: 43, Mismatches: 1, Indels: 4
0.90 0.02 0.08
Matches are distributed among these distances:
23 18 0.42
24 1 0.02
26 1 0.02
27 23 0.53
ACGTcount: A:0.42, C:0.14, G:0.13, T:0.31
Consensus pattern (24 bp):
TGCATAACTAAATGACTTGTAAAA
Found at i:57159 original size:22 final size:22
Alignment explanation
Indices: 57109--57161 Score: 58
Period size: 22 Copynumber: 2.5 Consensus size: 22
57099 TTTTTATGTC
*
57109 AAACTC-TTATCTTTATGTCATG
1 AAACTCGTT-TCTTTAAGTCATG
57131 AAA-TCGTTTCTTTAAAGTCAT-
1 AAACTCGTTTCTTT-AAGTCATG
57152 AAACTCGTTT
1 AAACTCGTTT
57162 TTAATGAATT
Statistics
Matches: 27, Mismatches: 1, Indels: 6
0.79 0.03 0.18
Matches are distributed among these distances:
21 10 0.37
22 17 0.63
ACGTcount: A:0.30, C:0.17, G:0.09, T:0.43
Consensus pattern (22 bp):
AAACTCGTTTCTTTAAGTCATG
Found at i:57531 original size:52 final size:51
Alignment explanation
Indices: 57447--57545 Score: 137
Period size: 52 Copynumber: 1.9 Consensus size: 51
57437 GATCACAATC
* * *
57447 GTGTTCTTTGATCTATTTGCTTTGATTCTTTTCTGAT-TTGATGTTGTCTTA
1 GTGTTCCTTGATCTATTTACTTTGATTATTTTCTGATATTG-TGTTGTCTTA
*
57498 GTGTTCCTTGAATCTATTTACTTTGGTTATTTTCTGATATTGTGTTGT
1 GTGTTCCTTG-ATCTATTTACTTTGATTATTTTCTGATATTGTGTTGT
57546 AAAGAGTTTT
Statistics
Matches: 42, Mismatches: 4, Indels: 3
0.86 0.08 0.06
Matches are distributed among these distances:
51 9 0.21
52 30 0.71
53 3 0.07
ACGTcount: A:0.13, C:0.11, G:0.18, T:0.58
Consensus pattern (51 bp):
GTGTTCCTTGATCTATTTACTTTGATTATTTTCTGATATTGTGTTGTCTTA
Found at i:62528 original size:35 final size:35
Alignment explanation
Indices: 62482--62551 Score: 113
Period size: 35 Copynumber: 2.0 Consensus size: 35
62472 TGAAAGGTAA
** *
62482 AGGTAAGAGTATGGGGGGGATAGAGTCATGTTTCT
1 AGGTAAGAGTATGGGGGAAATAAAGTCATGTTTCT
62517 AGGTAAGAGTATGGGGGAAATAAAGTCATGTTTCT
1 AGGTAAGAGTATGGGGGAAATAAAGTCATGTTTCT
62552 GTCTTTGTGT
Statistics
Matches: 32, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
35 32 1.00
ACGTcount: A:0.30, C:0.06, G:0.36, T:0.29
Consensus pattern (35 bp):
AGGTAAGAGTATGGGGGAAATAAAGTCATGTTTCT
Found at i:87705 original size:21 final size:22
Alignment explanation
Indices: 87681--87730 Score: 61
Period size: 21 Copynumber: 2.4 Consensus size: 22
87671 CTCTCATCTC
*
87681 TTTTCTTGTGAAGATTT-T-ATT
1 TTTTCTT-TGAAAATTTCTAATT
87702 TTTT-TTTGAAAATTTCTAATT
1 TTTTCTTTGAAAATTTCTAATT
87723 TTTTCTTT
1 TTTTCTTT
87731 TGTTTTTTAC
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
19 8 0.32
20 3 0.12
21 11 0.44
22 3 0.12
ACGTcount: A:0.20, C:0.06, G:0.08, T:0.66
Consensus pattern (22 bp):
TTTTCTTTGAAAATTTCTAATT
Found at i:88243 original size:53 final size:53
Alignment explanation
Indices: 88163--88293 Score: 244
Period size: 53 Copynumber: 2.5 Consensus size: 53
88153 TTCTCGTGTA
*
88163 TATCTTCTCGTGTAGTTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGGCCTC
1 TATCTTCTCGTGTAGCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGGCCTC
88216 TATCTTCTCGTGTAGCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGGCCTC
1 TATCTTCTCGTGTAGCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGGCCTC
*
88269 TGTCTTCTCGTGTAGCTTCGTGTCT
1 TATCTTCTCGTGTAGCTTCGTGTCT
88294 TCGCGTGTTG
Statistics
Matches: 76, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
53 76 1.00
ACGTcount: A:0.07, C:0.31, G:0.26, T:0.36
Consensus pattern (53 bp):
TATCTTCTCGTGTAGCTTCGTGTCTGCTGGCCTCGCCTCACTGCGGAGGCCTC
Found at i:92785 original size:17 final size:17
Alignment explanation
Indices: 92763--92796 Score: 59
Period size: 17 Copynumber: 2.0 Consensus size: 17
92753 CAAAAAACAG
*
92763 AAACAGAAACTTATAAA
1 AAACAGAAACTCATAAA
92780 AAACAGAAACTCATAAA
1 AAACAGAAACTCATAAA
92797 CTTGTAAAAA
Statistics
Matches: 16, Mismatches: 1, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
17 16 1.00
ACGTcount: A:0.65, C:0.15, G:0.06, T:0.15
Consensus pattern (17 bp):
AAACAGAAACTCATAAA
Found at i:92805 original size:24 final size:24
Alignment explanation
Indices: 92755--92836 Score: 114
Period size: 24 Copynumber: 3.5 Consensus size: 24
92745 CCCATTGACA
* *
92755 AAAAACAGAAA--CAGAAACTTAT
1 AAAAACAGAAACTCATAAACTTGT
92777 AAAAAACAGAAACTCATAAACTTGT
1 -AAAAACAGAAACTCATAAACTTGT
*
92802 AAAAACAGAAACTTATAAACTTGT
1 AAAAACAGAAACTCATAAACTTGT
92826 AAAAACAGAAA
1 AAAAACAGAAA
92837 GTTTGAGTAC
Statistics
Matches: 54, Mismatches: 3, Indels: 3
0.90 0.05 0.05
Matches are distributed among these distances:
23 11 0.20
24 34 0.63
25 9 0.17
ACGTcount: A:0.61, C:0.13, G:0.09, T:0.17
Consensus pattern (24 bp):
AAAAACAGAAACTCATAAACTTGT
Found at i:93869 original size:15 final size:15
Alignment explanation
Indices: 93849--93909 Score: 77
Period size: 15 Copynumber: 4.1 Consensus size: 15
93839 TAGGCTGAGA
*
93849 TGCATTAGAAGGCCC
1 TGCATTAGATGGCCC
93864 TGCATTAGATGGCCC
1 TGCATTAGATGGCCC
*
93879 TGCATGAGATGGCCC
1 TGCATTAGATGGCCC
* **
93894 CGCAGCAGATGGCCC
1 TGCATTAGATGGCCC
93909 T
1 T
93910 ACCCCAACAG
Statistics
Matches: 40, Mismatches: 6, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
15 40 1.00
ACGTcount: A:0.21, C:0.30, G:0.30, T:0.20
Consensus pattern (15 bp):
TGCATTAGATGGCCC
Found at i:94130 original size:24 final size:24
Alignment explanation
Indices: 94098--94151 Score: 90
Period size: 24 Copynumber: 2.2 Consensus size: 24
94088 CATTTGGCAA
*
94098 ATTCTCCCCATCTTCCAAAGGCCC
1 ATTCTCCCCATCTTCCAAAGGACC
*
94122 ATTCTCCCCATCTTCTAAAGGACC
1 ATTCTCCCCATCTTCCAAAGGACC
94146 ATTCTC
1 ATTCTC
94152 AATGAGTCCT
Statistics
Matches: 28, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
24 28 1.00
ACGTcount: A:0.22, C:0.41, G:0.07, T:0.30
Consensus pattern (24 bp):
ATTCTCCCCATCTTCCAAAGGACC
Found at i:94801 original size:13 final size:13
Alignment explanation
Indices: 94783--94811 Score: 58
Period size: 13 Copynumber: 2.2 Consensus size: 13
94773 AAAAGCCAAG
94783 CATTCAATATTAA
1 CATTCAATATTAA
94796 CATTCAATATTAA
1 CATTCAATATTAA
94809 CAT
1 CAT
94812 GATATGCTCT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 16 1.00
ACGTcount: A:0.45, C:0.17, G:0.00, T:0.38
Consensus pattern (13 bp):
CATTCAATATTAA
Found at i:97524 original size:331 final size:328
Alignment explanation
Indices: 96803--97525 Score: 918
Period size: 328 Copynumber: 2.2 Consensus size: 328
96793 TTTGCCATGA
* * * *
96803 CTGAGATTTTGTTAGTTGAATATATATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACT
1 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACA
* * * ** **
96868 GAGCTAGGCCCCGGAATGCGATTTTAGCTGAAAACCATGATAGTTAATACAAGATTTCGGCTAAA
66 AACCTAGGCCCCAGAACACGATTTTAGCCAAAAACCATGATAGTTAATACAAGATTTCGGCTAAA
*
96933 ATTTTGCAAAAAATTGATCCGAAAGATTTTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATA
131 ATTTTGCAAAAAATTGATCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATA
* * * * * *
96998 TATAATTCAACGTTAAAAGGATTTGAGGACTTTTAACGCATTTAATATCGTTTTTCATATTTTGA
196 TATAATTCAACGTCAAAAAGATTTGAGGACTTTTAACACATTCAATATCGTTTTCCATATTTTAA
* * * *
97063 ATTAATTTCTATTTAAATCGAAACAAGATTTAGATTCACATAAAAATAAATCCTTAAATCTAATG
261 ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATG
97128 TGC
326 TGC
* * * * * *
97131 CTGAGATTTGATTAGAAGAATAAAGATATTTTAAGGAGTCTCGGCGCCAAAAATCATGCAAAACA
1 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAAC-
* * * *
97196 AAACCGT-GGCCCTAGAACACGTTTTTAGCCAAAAACCATGAT-GTTTAGTACATGATTTCGGCT
65 AAACC-TAGGCCCCAGAACACGATTTTAGCCAAAAACCATGATAG-TTAATACAAGATTTCGGCT
* * * *
97259 AAAATTTTGC-AAAAATTGATCCGACAGATATTTCCTCAATTTTTGGCTAAAATACTCATAAAAA
128 AAAATTTTGCAAAAAATTGATCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAA
*
97323 ATATATAATTCAACGTCAAAAAGA-TTGAAGGGCTTTTAACAC-TTCCAATATAAC-TTTTCCTA
193 ATATATAATTCAACGTCAAAAAGATTTG-AGGACTTTTAACACATT-CAATAT--CGTTTTCC-A
* *
97385 TTTTTTCAAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCTCATAAAAACAAATCCTTA
253 TATTTT-AAATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTA
* *
97450 AGTCTAATGTGG
317 AATCTAATGTGC
* * * *
97462 TTGAGATTTGGTTAGATGAATATAGATATTTCATGGGGTCTTGGCACCAAAAATCGTGCAAAAC
1 CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAAC
97526 TGAGTCGGGC
Statistics
Matches: 335, Mismatches: 51, Indels: 15
0.84 0.13 0.04
Matches are distributed among these distances:
327 5 0.01
328 144 0.43
329 62 0.19
330 8 0.02
331 116 0.35
ACGTcount: A:0.38, C:0.15, G:0.15, T:0.32
Consensus pattern (328 bp):
CTGAGATTTGGTTAGATGAATATAGATATTTCAAGGAGTCTTGGCACCAAAAATCATGCAAAACA
AACCTAGGCCCCAGAACACGATTTTAGCCAAAAACCATGATAGTTAATACAAGATTTCGGCTAAA
ATTTTGCAAAAAATTGATCCGAAAGATATTTCCTCAATTTCTAGCGAAAATACTCATAAAAAATA
TATAATTCAACGTCAAAAAGATTTGAGGACTTTTAACACATTCAATATCGTTTTCCATATTTTAA
ATTAATTTCTAATTAAATCGAAACAAGATTCAGATGCACATAAAAACAAATCCTTAAATCTAATG
TGC
Found at i:99205 original size:328 final size:326
Alignment explanation
Indices: 97875--102158 Score: 5170
Period size: 328 Copynumber: 13.1 Consensus size: 326
97865 AAAACCGTGA
* * *
97875 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAAATTTGGAATGATGAATAAAGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* *
97940 TAATTCAATGAGTCTTGGCGCCAAAAATCATTCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTTC
* * * * *
98005 AACCAAGAATCGTGATGGTACACGATTTCGGCAAATATTTTGCAAAAATTTACCCGAAAGA-TTT
129 AGCCAAAAATCGTGA-AGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTT
*
98069 TCCCCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGGGC
193 TCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGGGC
* * * * * * * *
98134 TTTCCATGCTTCTAATATAATTTTTTTAAAATTTTACCGAATTAATTTCCGTTTAAATCGAAACG
258 TTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAAACA
98199 TGAT
323 TGAT
* *
98203 TCAAATACTCGTAAAATCAAATCCCTTTATCCAACGTGGCTTAGATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAAT-CCTTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * * *
98268 TAATTCAACGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTTC
** * * *
98333 AGCCAAAAATCGTGATGGTTAGTACATTATTTCGGCAAAAATTTT-CAAAAACTGAACCGAAATA
129 AGCCAAAAATCGTGA-----AGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA
* * * *
98397 TTTTTCCTCAACTTTTATCCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAAATTGAA
189 TTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAA
* * * * *
98462 GGGCTTTGCACTCTTCTAATATATATATTTTTAAAATTTTCCTAATTAATTTTCGATTAAATCGA
254 GGGCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGA
98527 AACATGAT
319 AACATGAT
* * * *
98535 TTAAATGCTCGTAAAATCAAATCCTTAAATCCAAGGTGGCTGAGATTTGGGATGATGAATATA-G
1 TCAAATGCTCGTAAAATCAAATCCTT-TATCCAACGTGGCTGAGATTTGGAATGATGAATA-AGG
* * * *
98599 ATAATTCAATGAGTCTTGAG-GCCAAAAATCTTACAAAATTGAGCAGGGGCCCCGGAACGCGTTT
64 ATAATTCAATGAGTCTTG-GCGCCAAAAATCATGCAAAACTGAGC-CGGGCCCCGGAACGCGTTT
* * * * * * *
98663 TCAGCCAAGAATCGTG-A-T----G-GTT-AGTACACAATTTCGGCAAAAATTGACCCGAAAAAT
127 TCAGCCAAAAATCGTGAAGTACACGATTTCGGCA-AAAATTT-TGCAAAAATTGACCCGAAAGAT
* * *
98720 TTTTCCCCAATTTTTAACCGCAATACTCG-AAAAAATATATTATTCAACGCCAAAAAGATTGAAG
190 TTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAG
* * *
98784 GGCATTGCACGCTTCTAATATCTTTTTTTTTTAATTTTTCCGAATTAATTTTCGATTAAATCGAA
255 GGCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAA
98849 ACATGAT
320 ACATGAT
** *
98856 TCAAATGCTCGTAAAATCAAATCCTCAAATCCAACGTGGCTGAGATTTGGAATGATGAGTAAGGA
1 TCAAATGCTCGTAAAATCAAATCCT-TTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * *
98921 TAATTCAATGAGTCTTGACGCCAAAAATCATGCAAAATTGAGTCGGGCCCCGGAACGCGTTTTCA
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGCGTTTTCA
* * * * *
98986 GCCAAAAATCGTGACGTACACGATTTCGGCAAAAATTTTGCAAAAAATGACCAGAAATATTTATC
130 GCCAAAAATCGTGAAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTC
* * * * * *
99051 ATCAATTTTCAACTGCAATACTCATAAATAATATATAATTCAACACCAAAAAGATTGAAGGGATT
195 CTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGGGCTT
* * *
99116 TGCATGCTTCTAATATATTTTTTTTCTTAATTTTTCCCAATTAATTTTCGATTAAATCGAAACAT
260 TGCACGCTTCTAATATATTTTTTTT-TAAATTTTTCCGAATTAATTTTCGATTAAATCGAAACAT
99181 GAT
324 GAT
* *
99184 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATATGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * *
99249 TAATTCAATGGGTCTTGGCGCCAAAAATCATGCAAAACTGATCCGTGGCCCCGGAATGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTTC
* * *
99314 AGCCAAAAATCGTGACGTACACAATTT-GG----------GCAAAAATTGACCCGAAAGATTTTA
129 AGCCAAAAATCGTGAAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTT
* * * *
99368 CC-CTAATTTTTAACCACAATACTCGTAAAAAAAATATATTTCAACGCCAAAAAGATTGAAGGGC
194 CCTC-AATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGGGC
* * * *
99432 TTTGCACGCTTCTAATATCTTTTTTTTAAAAAATTTTTCCAAATTAATTTTCGATTAAATTGAAA
258 TTTGCACGCTTCTAATATATTTTTTTT--TAAATTTTTCCGAATTAATTTTCGATTAAATCGAAA
99497 CATGAT
321 CATGAT
* * * * *
99503 TCCAATGCTCGTAAAATCAAATCCTTAAATCCAAGGTGGCTGAGACTTGCG-ACGATGAATATA-
1 TCAAATGCTCGTAAAATCAAATCCTT-TATCCAACGTGGCTGAGATTTG-GAATGATGAATA-AG
* * *
99566 GATAATTCAATGAGTCTTGGGGCCAAAAAT-ATTGCAAAACTGAGCCGGAACCCCGGAACGTGTT
63 GATAATTCAATGAGTCTTGGCGCCAAAAATCA-TGCAAAACTGAGCCGG-GCCCCGGAACGCGTT
* *
99630 TTCAGCCAAGAATCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAA
126 TTCAGCCAAAAATC--G-T-G-AAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAA
*
99695 AG-----------ATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATT
186 AGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATT
*
99749 GAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAAAATTTTTCCGAATTAATTTTCGATTAAA
251 GAAGGGCTTTGCACGCTTCTAATATATTTTTTTTT-AAATTTTTCCGAATTAATTTTCGATTAAA
*
99814 TCGAAACATAAT
315 TCGAAACATGAT
* * *
99826 TCAAATGCTCGTAAAATCAAATCCGTATATCCAACGTAGCTGAAATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * * *
99891 TACA-TCAATGAGACTTGGCGCCAAAAATCATGCAAAACTAAACCGTGGCCCCGGAACTCGTTTT
65 TA-ATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTT
* * *
99955 CAGCCTAGAATCGTGATGGTTAGTTACACGATTTCGGCAAAAATTCTGCAAAAATTGACCCGAAA
128 CAGCCAAAAATCGTGA-----AG-TACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAA
* * *
100020 GATTTTTCCAT-AATTTTTAAACGCAATACTCGTAAAAAAATATATAATTCAACGCCAAAAATAT
187 GATTTTTCC-TCAATTTTTAACCGCAATACTCGT-AAATAATATATAATTCAACGCCAAAAAGAT
* ** *
100084 TGAAGGGCTTTCCACGCTTCTAATATCATTTTTTTTTTACTTTTTTCCAAATTAATTTTCGATTA
250 TGAAGGGCTTTGCACGCTTCTAATAT-A-TTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTA
*
100149 AATCGAAACATTAT
313 AATCGAAACATGAT
* ** * ** *
100163 TCAAATGCTCGTAAAATAAAATCCTAAAATCCAACGTGGCTGATATTTGGGGTGATGCATAAGGA
1 TCAAATGCTCGTAAAATCAAATCCT-TTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * * * *
100228 TAATTCAATGAGTCTTGGCGCAAAAAATCTTGCAAAACTAAGCAGGGGCCCCAGAACGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGC-CGGGCCCCGGAACGCGTTTTC
* * * *
100293 AGTCAAAAATCGTGATGGTTTGTACAGGATTTCGGCAAAAATTTTGCAAAAATTAACCCGAAAGA
129 AGCCAAAAATCGTGA-----AGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA
100358 TTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAA
189 TTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAA
* *
100423 GGGCTTTGCACGCTTCT-A-ATATCTTTTTTT---TTGTTCCGAATTAATTTGT-GATTAAATCG
254 GGGCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTT-TCGATTAAATCG
100482 AAACATGAT
318 AAACATGAT
* *
100491 TCAAATGCTCGTAAAATAAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
** * * *
100556 TAATTCAATG-GTTCTTGGCATCAAAAGTCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTT
65 TAATTCAATGAG-TCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTT
* * *
100620 TAGCCAAAAATCGTGATGGTTAGTACACGATTTAGGCAAGAATTTTGCAAAAATTGACCCGAAAG
128 CAGCCAAAAATCGTGA-----AGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAG
* *
100685 ATTTTTCCCCAATTTTTGAA-CGCAATACTCGTAAATAATATATATTTCAACGCCAAAAAGATTG
188 ATTTTTCCTCAATTTTT-AACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTG
* * * *
100749 AAGGGCTTTGCATGCTTCTAATATCTTTTTTTTTAAAATTTTTCTGAATTAATTTGCGATTAAAT
252 AAGGGCTTTGCACGCTTCTAATATATTTTTTTTT-AAATTTTTCCGAATTAATTTTCGATTAAAT
100814 CGAAACATGAT
316 CGAAACATGAT
* * * *
100825 TAAAATGCACGTAAAATCAAATACGTTTATCCAACGTGGCTTAGATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAAT-CCTTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
*
100890 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAATTGAGCCGGGGCCCCGGAACGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGCGTTTTC
* * *
100955 AGCCAAAAATCGTGATGGTAAGTACACGATTTCGACAAAAATTTTGCAAAAAATGACCAGAAAGA
129 AGCCAAAAATC--G-T-G-AAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA
* * * *
101020 TTTTTCCTCAA-TTTTAACTGCAATACTCTTAAATAATATATAATACAACACCAAAAAGATTGAA
189 TTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAA
* * * * *
101084 GGGCTTTGCATGCATCTAATATCTTTTTTTTT-TATTTTTCTC-AATTAATTTTTCGATTAAATT
254 GGGCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTC-CGAATTAA-TTTTCGATTAAATC
101147 GAAACATGAT
317 GAAACATGAT
* * *
101157 TCAAATGCTCGTAAAATCAAATCCGTTTATCCGACGTAGCTGAGATTTGAAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * * *
101222 TAATTCAATGGGTCTTGGCGCCAAAAGTCATGCAAAACTGAGCCGTGGTCCCGGAATGCGTTTT-
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCG-GGCCCCGGAACGCGTTTTC
* *
101286 TGCCAAAAATCGTGATGGTTAGTACACGATTTC-GCAAAAATTTTGCAAAAATTGACCCGAAATA
129 AGCCAAAAATCGTGA-----AGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGA
*
101350 TTTTTCCTAAATTTTTAACCGCAATACTCGTAAA-AACTATATAA-TCAACGCCAAAAAGATTGA
189 TTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAA-TATATAATTCAACGCCAAAAAGATTGA
* ** *
101413 AGGGCTTTGCACGCTTCTAATAT-CTTTTTTTTAAATTTTTCTTAATTAATTTGCGATTAAATCG
253 AGGGCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCG
*
101477 AAACATTAT
318 AAACATGAT
* *
101486 TCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * * *
101551 TAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCAGGGCCTCGAAACACGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGCGTTTTC
* *
101616 AGCCAAAATTCGTAATAACGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATT
129 AGCCAAAAATCGT--GAA-GTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATT
* * *
101681 TTTCCAC-A-TTTTAACCGCAATATTTGTAAA-AATATATAATTCAACGCCAAAAAGATTGAAGG
191 TTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGG
* * *
101743 GCTTTGCACGCTTCTAATATATTTTTTTTAAAATTTTTCTGAATTAATTTCGCGACTTAAATCG-
256 GCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTT-TCGA-TTAAATCGA
101807 AACATGACT
319 AACATGA-T
* * * *
101816 T--AATGCACGTAAAATCAAATACGTTTATCCAACGTGGCTTAGATTTGGAATGATGAATAAGAA
1 TCAAATGCTCGTAAAATCAAAT-CCTTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGA
* * *
101879 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCAGGGTCTCGAAACGCGTTTTC
65 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCC-GGGCCCCGGAACGCGTTTTC
* * *
101944 AGCCAAAATTCGTAATAACGTACACGATTTCGGCAAAATTTTTGCAAAAATTGACCCGAAAGATT
129 AGCCAAAAATCGT--GAA-GTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATT
* * * * *
102009 TTTCCCCAATTTTTAACCGCAATACTCGTAAATAACATATAATTCAACACCAAAAATATTTAAGG
191 TTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGG
*
102074 GCTTTGCACGCTTC---TA-A----TTTTT---TTTTTCCGAATTAATTTTCGATTAAATTGAAA
256 GCTTTGCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAAA
102128 CATGAT
321 CATGAT
* *
102134 TCAGATGCTCGTAAAATAAAATCCT
1 TCAAATGCTCGTAAAATCAAATCCT
102159 CAAATCCTCA
Statistics
Matches: 3462, Mismatches: 360, Indels: 277
0.84 0.09 0.07
Matches are distributed among these distances:
317 1 0.00
318 110 0.03
319 169 0.05
320 77 0.02
321 194 0.06
322 47 0.01
323 158 0.05
324 138 0.04
325 3 0.00
326 51 0.01
327 135 0.04
328 776 0.22
329 247 0.07
330 142 0.04
331 134 0.04
332 398 0.11
333 81 0.02
334 207 0.06
335 91 0.03
336 125 0.04
337 166 0.05
338 11 0.00
339 1 0.00
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (326 bp):
TCAAATGCTCGTAAAATCAAATCCTTTATCCAACGTGGCTGAGATTTGGAATGATGAATAAGGAT
AATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGCCCCGGAACGCGTTTTCAG
CCAAAAATCGTGAAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCC
TCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTT
GCACGCTTCTAATATATTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAAACATGA
T
Found at i:100780 original size:660 final size:659
Alignment explanation
Indices: 97875--102165 Score: 5459
Period size: 660 Copynumber: 6.5 Consensus size: 659
97865 AAAACCGTGA
* *
97875 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAAATTTGGAATGATGAATAAAGA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
*
97940 TAATTCAATGAGTCTTGGCGCCAAAAATCATTCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
66 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
* * *
98005 AACCAAGAATCGTGAT-G---GTACACGATTTCGGCAA-ATATTTTGCAAAAATTTACCCGAAAG
131 AGCCAAAAATCGTGATGGTTAGTACACGATTT-GGCAAGA-ATTTTGCAAAAATTGACCCGAAAG
*
98065 A-TTTTCCCCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGATTGA
194 ATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGA
* * * * * * *
98129 AGGGCTTTCCATGCTTCTAATATAATTTTTTTAAAATTTTACCGAATTAATTTCCGTTTAAATCG
259 AGGGCTTTGCACGCTTCTAATAT-CTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCG
* * ** *
98194 AAACGTGATTCAAATACTCGTAAAATCAAATCCCTTTATCCAACGTGGCTTAGATTTGGAATGAT
323 AAACATGATTCAAATGCTCGTAAAATCAAAT-CCTAAATCCAACGTGGCTGAGATTTGGAATGAT
* * * *
98259 GAATAAGGATAATTCAACGAGTCTTGGCACCAAAAATCATGCAAAACTGAGCCGTGGCCTCGGAA
387 GAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAA
* ** *
98324 TGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACATTATTTCGGCAAAAATTTT-CAAAAACTGA
452 CGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGA
* * * * *
98388 ACCGAAATATTTTTCCTCAACTTTTATCCGCAATACTCGTAAAAAATATATAATTCAACGCCAAA
517 CCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAA
* * * * *
98453 AAAATTGAAGGGCTTTGCACTCTTCTAATATATATATTTTTAAAATTTTCCTAATTAATTTTCGA
582 AAGATTGAAGGGCTTTGCACGCTTCTAATATCT-T-TTTTT--ATTTTTCCGAATTAATTTTCGA
98518 TTAAATCGAAACATGAT
643 TTAAATCGAAACATGAT
* * * * *
98535 TTAAATGCTCGTAAAATCAAATCC-TTAAATCCAAGGTGGCTGAGATTTGGGATGATGAATATA-
1 TCAAATGCTCGTAAAATCAAATCCGTT-TATCCAACGTAGCTGAGATTTGGAATGATGAATA-AG
* * * * * *
98598 GATAATTCAATGAGTCTTGAG-GCCAAAAATCTTACAAAATTGAGCAGGGGCCCCGGAACGCGTT
64 GATAATTCAATGAGTCTTG-GCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTT
* *
98662 TTCAGCCAAGAATCGTGATGGTTAGTACACAATTT--C--G------GCAAAAATTGACCCGAAA
128 TTCAGCCAAAAATCGTGATGGTTAGTACACGATTTGGCAAGAATTTTGCAAAAATTGACCCGAAA
* *
98717 AATTTTTCCCCAATTTTTAACCGCAATACTCG-AAAAAATATATTATTCAACGCCAAAAAGATTG
193 GATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTG
* *
98781 AAGGGCATTGCACGCTTCTAATATCTTTTTTTTTTAATTTTTCCGAATTAATTTTCGATTAAATC
258 AAGGGCTTTGCACGCTTCTAATATC-TTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATC
98846 GAAACATGATTCAAATGCTCGTAAAATCAAATCCTCAAATCCAACGTGGCTGAGATTTGGAATGA
322 GAAACATGATTCAAATGCTCGTAAAATCAAATCCT-AAATCCAACGTGGCTGAGATTTGGAATGA
* * * *
98911 TGAGTAAGGATAATTCAATGAGTCTTGACGCCAAAAATCATGCAAAATTGAGTC-GGGCCCCGGA
386 TGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGA
* *
98975 ACGCGTTTTCAGCCAAAAATCGTGA-----CGTACACGATTTCGGCAAAAATTTTGCAAAAAATG
451 ACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTG
* * * * * * * *
99035 ACCAGAAATATTTATCATCAATTTTCAACTGCAATACTCATAAATAATATATAATTCAACACCAA
516 ACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAA
* * * *
99100 AAAGATTGAAGGGATTTGCATGCTTCTAATATATTTTTTTTCTTAATTTTTCCCAATTAATTTTC
581 AAAGATTGAAGGGCTTTGCACGCTTCT-A-ATA-TCTTTTT-TT-ATTTTTCCGAATTAATTTTC
99165 GATTAAATCGAAACATGAT
641 GATTAAATCGAAACATGAT
*
99184 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATATGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
* *
99249 TAATTCAATGGGTCTTGGCGCCAAAAATCATGCAAAACTGATCCGTGGCCCCGGAATGCGTTTTC
66 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
* *
99314 AGCCAAAAATCGTGA-----CGTACACAATTT-G---G------GCAAAAATTGACCCGAAAGAT
131 AGCCAAAAATCGTGATGGTTAGTACACGATTTGGCAAGAATTTTGCAAAAATTGACCCGAAAGAT
* * * * *
99364 TTTACCCTAATTTTTAACCACAATACTCGTAAAAAAAATATATTTCAACGCCAAAAAGATTGAAG
196 TTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAG
* *
99429 GGCTTTGCACGCTTCTAATATCTTTTTTTTAAAAAATTTTTCCAAATTAATTTTCGATTAAATTG
261 GGCTTTGCACGCTTCTAATATCTTTTTTTT---AAATTTTTCCGAATTAATTTTCGATTAAATCG
* * * *
99494 AAACATGATTCCAATGCTCGTAAAATCAAATCCTTAAATCCAAGGTGGCTGAGACTTGCG-ACGA
323 AAACATGATTCAAATGCTCGTAAAATCAAATCC-TAAATCCAACGTGGCTGAGATTTG-GAATGA
* **
99558 TGAATATA-GATAATTCAATGAGTCTTGGGGCCAAAAAT-ATTGCAAAACTGAGCCGGAACCCCG
386 TGAATA-AGGATAATTCAATGAGTCTTGGCGCCAAAAATCA-TGCAAAACTGAGCCGGGGCCCCG
* * *
99621 GAACGTGTTTTCAGCCAAGAATCATGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAAT
449 GAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAAT
*
99686 TGACCCGAAAG-----------ATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCC
514 TGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCC
99740 AAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAAAATTTTTCCGAATTAATTT
579 AAAAAGATTGAAGGGCTTTGCACGCTTCTAATATC--TTTTTTT---ATTTTTCCGAATTAATTT
*
99805 TCGATTAAATCGAAACATAAT
639 TCGATTAAATCGAAACATGAT
* *
99826 TCAAATGCTCGTAAAATCAAATCCGTATATCCAACGTAGCTGAAATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
* * *
99891 TACA-TCAATGAGACTTGGCGCCAAAAATCATGCAAAACTAAACCGTGGCCCCGGAACT-CGTTT
66 TA-ATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAA-TGCGTTT
* * * *
99954 TCAGCCTAGAATCGTGATGGTTAGTTACACGATTTCGGCAAAAATTCTGCAAAAATTGACCCGAA
129 TCAGCCAAAAATCGTGATGGTTAG-TACACGATTT-GGCAAGAATTTTGCAAAAATTGACCCGAA
** * *
100019 AGATTTTTCCATAATTTTTAAACGCAATACTCGTAAAAAAATATATAATTCAACGCCAAAAATAT
192 AGATTTTTCCCCAATTTTTAACCGCAATACTCGT-AAAAAATATATAATTCAACGCCAAAAAGAT
* ** *
100084 TGAAGGGCTTTCCACGCTTCTAATATCATTTTTTTTTTACTTTTTTCCAAATTAATTTTCGATTA
256 TGAAGGGCTTTGCACGCTTCTAATATC---TTTTTTTTAAATTTTTCCGAATTAATTTTCGATTA
* * * *
100149 AATCGAAACATTATTCAAATGCTCGTAAAATAAAATCCTAAAATCCAACGTGGCTGATATTTGGG
318 AATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCT-AAATCCAACGTGGCTGAGATTTGGA
* * * * * *
100214 GTGATGCATAAGGATAATTCAATGAGTCTTGGCGCAAAAAATCTTGCAAAACTAAGCAGGGGCCC
382 ATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCC
* * * *
100279 CAGAACGCGTTTTCAGTCAAAAATCGTGATGGTTTGTACAGGATTTCGGCAAAAATTTTGCAAAA
447 CGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAA
*
100344 ATTAACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACG
512 ATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACG
*
100409 CCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTT-TTGTTCCGAATTAATTTGT-
577 CCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTATTTTTCCGAATTAATTT-TC
100472 GATTAAATCGAAACATGAT
641 GATTAAATCGAAACATGAT
*
100491 TCAAATGCTCGTAAAATAAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
** * *
100556 TAATTCAATG-GTTCTTGGCATCAAAAGTCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTT
66 TAATTCAATGAG-TCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTT
*
100620 TAGCCAAAAATCGTGATGGTTAGTACACGATTTAGGCAAGAATTTTGCAAAAATTGACCCGAAAG
130 CAGCCAAAAATCGTGATGGTTAGTACACGATTT-GGCAAGAATTTTGCAAAAATTGACCCGAAAG
* *
100685 ATTTTTCCCCAATTTTTGAA-CGCAATACTCGTAAATAATATATATTTCAACGCCAAAAAGATTG
194 ATTTTTCCCCAATTTTT-AACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTG
* * *
100749 AAGGGCTTTGCATGCTTCTAATATCTTTTTTTTTAAAATTTTTCTGAATTAATTTGCGATTAAAT
258 AAGGGCTTTGCACGCTTCTAATATC-TTTTTTTT-AAATTTTTCCGAATTAATTTTCGATTAAAT
* * * ** *
100814 CGAAACATGATTAAAATGCACGTAAAATCAAATACGTTTATCCAACGTGGCTTAGATTTGGAATG
321 CGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCTAAATCCAACGTGGCTGAGATTTGGAATG
*
100879 ATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAATTGAGCCGGGGCCCCGG
385 ATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGG
* * *
100944 AACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTACACGATTTCGACAAAAATTTTGCAAAAAAT
450 AACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATT
* * * * *
101009 GACCAGAAAGATTTTTCCTCAA-TTTTAACTGCAATACTCTTAAATAATATATAATACAACACCA
515 GACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCA
* *
101073 AAAAGATTGAAGGGCTTTGCATGCATCTAATATCTTTTTTTTTTATTTTTCTC-AATTAATTTTT
580 AAAAGATTGAAGGGCTTTGCACGCTTCTAATATC---TTTTTTTATTTTTC-CGAATTAA-TTTT
*
101137 CGATTAAATTGAAACATGAT
640 CGATTAAATCGAAACATGAT
* *
101157 TCAAATGCTCGTAAAATCAAATCCGTTTATCCGACGTAGCTGAGATTTGAAATGATGAATAAGGA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
* * *
101222 TAATTCAATGGGTCTTGGCGCCAAAAGTCATGCAAAACTGAGCCGTGGTCCCGGAATGCGTTTT-
66 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
* * * *
101286 TGCCAAAAATCGTGATGGTTAGTACACGATTTCGCAAAAATTTTGCAAAAATTGACCCGAAATAT
131 AGCCAAAAATCGTGATGGTTAGTACACGATTTGGCAAGAATTTTGCAAAAATTGACCCGAAAGAT
** *
101351 TTTTCCTAAATTTTTAACCGCAATACTCGTAAAAACTATATAA-TCAACGCCAAAAAGATTGAAG
196 TTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAG
** *
101415 GGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCTTAATTAATTTGCGATTAAATCGAAA
261 GGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAAA
* * ** *
101480 CATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAA
326 CATGATTCAAATGCTCGTAAAATCAAATCC-TAAATCCAACGTGGCTGAGATTTGGAATGATGAA
* * * * *
101545 TAAGGATAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCAGGGCCTCGAAACAC
390 TAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGC
* * *
101610 GTTTTCAGCCAAAATTCGT-A--ATAACGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACC
455 GTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCGGCAAAAATTTTGCAAAAATTGACC
* * *
101672 CGAAAGATTTTTCCAC-A-TTTTAACCGCAATATTTGTAAA-AATATATAATTCAACGCCAAAAA
519 CGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAA
* * *
101734 GATTGAAGGGCTTTGCACGCTTCTAATATATTTTTTTTAAAATTTTTCTGAATTAATTTCGCGAC
584 GATTGAAGGGCTTTGCACGCTTCTAATAT-CTTTTTTT---ATTTTTCCGAATTAATTT-TCGA-
101799 TTAAATCG-AACATGACT
643 TTAAATCGAAACATGA-T
* * * * *
101816 T--AATGCACGTAAAATCAAATACGTTTATCCAACGTGGCTTAGATTTGGAATGATGAATAAGAA
1 TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
* * * *
101879 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCAG-GGTCTCGAAACGCGTTTT
66 TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCC-GTGGCCCCGGAATGCGTTTT
* * *
101943 CAGCCAAAATTCGT-A--ATAACGTACACGATTTCGGCAA-AATTTTTGCAAAAATTGACCCGAA
130 CAGCCAAAAATCGTGATGGTTA-GTACACGATTT-GGCAAGAA-TTTTGCAAAAATTGACCCGAA
* * * *
102004 AGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAATAACATATAATTCAACACCAAAAATATT
192 AGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATT
* *
102069 TAAGGGCTTTGCACGCTTCT-A-A-----TTTTT---TTTTTCCGAATTAATTTTCGATTAAATT
257 GAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATC
* *
102124 GAAACATGATTCAGATGCTCGTAAAATAAAATCCTCAAATCC
322 GAAACATGATTCAAATGCTCGTAAAATCAAATCCT-AAATCC
102166 TCAAGTACAC
Statistics
Matches: 3207, Mismatches: 315, Indels: 230
0.85 0.08 0.06
Matches are distributed among these distances:
639 1 0.00
640 5 0.00
641 6 0.00
642 235 0.07
643 2 0.00
644 66 0.02
645 53 0.02
646 1 0.00
647 154 0.05
648 187 0.06
649 165 0.05
650 9 0.00
651 7 0.00
652 35 0.01
653 247 0.08
654 29 0.01
655 9 0.00
656 14 0.00
657 231 0.07
658 91 0.03
659 110 0.03
660 382 0.12
661 250 0.08
662 221 0.07
663 106 0.03
664 151 0.05
665 212 0.07
666 143 0.04
667 1 0.00
669 7 0.00
671 77 0.02
ACGTcount: A:0.36, C:0.18, G:0.16, T:0.31
Consensus pattern (659 bp):
TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGA
TAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTC
AGCCAAAAATCGTGATGGTTAGTACACGATTTGGCAAGAATTTTGCAAAAATTGACCCGAAAGAT
TTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAG
GGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAATTAATTTTCGATTAAATCGAAA
CATGATTCAAATGCTCGTAAAATCAAATCCTAAATCCAACGTGGCTGAGATTTGGAATGATGAAT
AAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTGAGCCGGGGCCCCGGAACGCG
TTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAAATTTTGCAAAAATTGACCCG
AAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAATTCAACGCCAAAAAGA
TTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTATTTTTCCGAATTAATTTTCGATTAAATCG
AAACATGAT
Found at i:102745 original size:316 final size:317
Alignment explanation
Indices: 102171--102766 Score: 951
Period size: 316 Copynumber: 1.9 Consensus size: 317
102161 AATCCTCAAG
* *
102171 TACACGATTTCAGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATATTCGTAA
1 TACACGATTTCAGCAAAAATTGACCCGAAATATTTTTCCTCAATTTCTAACCGCAATACTCGTAA
* ** * * *
102236 ATAATATATAATTCAACGTCAAAAATATTGAAGGGATTTGCACGCTTCTAATATCTTTTTTTTAA
66 AAAATATATAATTCAACACCAAAAAGATTGAAGGGATTTGCACGCTTCTAACATCATTTTTTTAA
* * * *
102301 TTTTTCCGAATTAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTT
131 TTTTTCCGAATTAATTTGCGATTAAAGCGAAACATGATTCAAATGCTCGTAAAACCAAATCCGTT
* * * *
102366 TATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTTGCGCCAAAAT
196 TATCCAACGTAGCTAAGATTTGGAATGATGAATAAGGATAAATGAATGAGTCTTGGCGCCAAAAA
102431 TCATGCAAAACTAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGA
261 TCATGCAAAACTAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGA
* * * *
102488 TACACGATTTCGGCAAAAATTGACCTGAAATGTTTTTCCTCCATTTCTAACCGCAATACTCGTAA
1 TACACGATTTCAGCAAAAATTGACCCGAAATATTTTTCCTCAATTTCTAACCGCAATACTCGTAA
*
102553 AAAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACAT-ATTTTTTTAA
66 AAAATATATAATTCAACACCAAAAAGATTGAAGGGATTTGCACGCTTCTAACATCATTTTTTTAA
* * *
102617 TTTTTCCGAATTAATTTTCTATTAAAGCGAAACATGATTCAAGTGCTCGTAAAACCAAATCCGTT
131 TTTTTCCGAATTAATTTGCGATTAAAGCGAAACATGATTCAAATGCTCGTAAAACCAAATCCGTT
*
102682 TATCCAACGTAGCTAAGATTTGGAATGATGAATATGGATAAATGAATGAGTCTTGGCGCCAAAAA
196 TATCCAACGTAGCTAAGATTTGGAATGATGAATAAGGATAAATGAATGAGTCTTGGCGCCAAAAA
*
102747 TCATGCAAAACTGAGCCGGG
261 TCATGCAAAACTAAGCCGGG
102767 TACACTTGCA
Statistics
Matches: 253, Mismatches: 26, Indels: 1
0.90 0.09 0.00
Matches are distributed among these distances:
316 146 0.58
317 107 0.42
ACGTcount: A:0.35, C:0.18, G:0.16, T:0.32
Consensus pattern (317 bp):
TACACGATTTCAGCAAAAATTGACCCGAAATATTTTTCCTCAATTTCTAACCGCAATACTCGTAA
AAAATATATAATTCAACACCAAAAAGATTGAAGGGATTTGCACGCTTCTAACATCATTTTTTTAA
TTTTTCCGAATTAATTTGCGATTAAAGCGAAACATGATTCAAATGCTCGTAAAACCAAATCCGTT
TATCCAACGTAGCTAAGATTTGGAATGATGAATAAGGATAAATGAATGAGTCTTGGCGCCAAAAA
TCATGCAAAACTAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGA
Found at i:103041 original size:291 final size:289
Alignment explanation
Indices: 102495--103055 Score: 779
Period size: 291 Copynumber: 1.9 Consensus size: 289
102485 GGATACACGA
*
102495 TTTCGGCAAAAATTGACCTGAAATGTTTTTCCTCCATTTCTAACCGCAATACTCGTAAAAAATAT
1 TTTCGGCAAAAATTGACCCGAAATGTTTTTCCTCCATTTCTAACCGCAATACTCGTAAAAAATAT
* * * *
102560 ATAATTCAACACCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTTAATTTTTCCG
66 ATAATCCAACACCAAAAAGATTGAAAGGCTTTCCACGCTTCTAACATATTTTTTTAATTTTTCAG
* * ** * *
102625 AATTAATTTTCTATTAAAGCGAAACATGATTCAAGTGCTCGTAAAACCAAATCCGTTTATCCAAC
131 AATTAATTTCCGATTAAAGCGAAACATGATTCAAAAGCTCATAAAACCAAATCCCTTTATCCAAC
* * * *
102690 GTAGCTAAGATTTGGAATGATGAATATGGATAAATGAATGAGTCTTGGCGCCAAAAATCATGCAA
196 GTAGCTAAGATTTGGAATGATAAATAAGAATAAATCAATGAGTCTTGGCGCCAAAAATCATGCAA
102755 AACTGAGCCGGGTACACTTGCAGCACGTT
261 AACTGAGCCGGGTACACTTGCAGCACGTT
*
102784 TTTCGGCAAAAATTGACCCGAAA-GATTTTT-CTCCAATTT-TCAACCGCAATACTCGTATAAAA
1 TTTCGGCAAAAATTGACCCGAAATG-TTTTTCCTCC-ATTTCT-AACCGCAATACTCGTAAAAAA
* *
102846 TATATAATCCAACGCCAAAAAGATT-AAAGGCTTTCCACGCTTCTAAGATAATTTTTTTAAAATT
63 TATATAATCCAACACCAAAAAGATTGAAAGGCTTTCCACGCTTCTAACAT-ATTTTTTT--AATT
* * ** * *
102910 TTTTAGAATTAATTTCCGATTAAATCTTAACATTATTCAAAAGCTCATAAAATCAAATCCCTTTA
125 TTTCAGAATTAATTTCCGATTAAAGCGAAACATGATTCAAAAGCTCATAAAACCAAATCCCTTTA
* * * * *
102975 TCCAACGTGGCTTAGATTTGGAATGATAAATAAGAATAATTCAATGCGTTTTGGCGCCAAAAATC
190 TCCAACGTAGCTAAGATTTGGAATGATAAATAAGAATAAATCAATGAGTCTTGGCGCCAAAAATC
103040 ATGCAAAACTGAGCCG
255 ATGCAAAACTGAGCCG
103056 TGGCTCCGGA
Statistics
Matches: 237, Mismatches: 29, Indels: 10
0.86 0.11 0.04
Matches are distributed among these distances:
288 27 0.11
289 82 0.35
291 128 0.54
ACGTcount: A:0.36, C:0.19, G:0.14, T:0.31
Consensus pattern (289 bp):
TTTCGGCAAAAATTGACCCGAAATGTTTTTCCTCCATTTCTAACCGCAATACTCGTAAAAAATAT
ATAATCCAACACCAAAAAGATTGAAAGGCTTTCCACGCTTCTAACATATTTTTTTAATTTTTCAG
AATTAATTTCCGATTAAAGCGAAACATGATTCAAAAGCTCATAAAACCAAATCCCTTTATCCAAC
GTAGCTAAGATTTGGAATGATAAATAAGAATAAATCAATGAGTCTTGGCGCCAAAAATCATGCAA
AACTGAGCCGGGTACACTTGCAGCACGTT
Found at i:105247 original size:332 final size:332
Alignment explanation
Indices: 103657--109479 Score: 7407
Period size: 332 Copynumber: 17.8 Consensus size: 332
103647 CACGATTTCG
* *
103657 GCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
103722 TCAACGCCAAAAAGATTGAA-GG----GCACGCTTCTAATATC-TTTTTTTT-ATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* * *
103780 TAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
*
103845 GCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
196 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* *
103910 TGAGCCGGGG-CCTCGGAACGCGTTTTCAGCCAAAAATCCT-A-----ACGTACACGATTTCAGC
261 TGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCGGC
103968 AAAAATTTT
324 AAAAATTTT
* * * * *
103977 GCAAAAATTGACCCGAAATACTTTTCCTCAATTCTTAACTGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
*
104042 TCAACACCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATC----TTTTT--TTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* * * * * * *
104101 TAATTTGCGATTAATTCGAAACAT-TTATCAAATGCTCGTAAGATCATATCCGTTTAACCAACAT
131 TAATTTTCGATTAAATCGAAACATGAT-TCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
* * * *
104165 AGCTGAGATTTGTAATGATGAATTAGGATAATTGAATGAGTCTTGGCGCCAAAATTCATGCAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * *
104230 CTGAGCCGAGG-CCTCGAAACGCGTTTTCAGCCAAAAATCGTAATGGTTAGTACACGATTTCGGT
260 CTGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGC
104294 AAAAATTTT
324 AAAAATTTT
* *
104303 GCAAAAATTGACCCGAAAGATATTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
** **
104368 TCAATTCCAAAAAGATTGAAGGGCTTT-CAACGCTTCTAATAT-AATTTTTTTAA--------AA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGC-ACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAA
* * *
104423 TT--TTTCCGATTAAATCGAAACATGATTCAATTGCTCGTAAAATCAAATCCCTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
* * * * *
104486 GGCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAATCTTGGCGCAAAAAATCATGTAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * * * * * * *
104551 TTAAGCCGTGGCCCCGGAATGTGTTTTCAACCAAAAATCGTGATGTTTAGTACATGATTTCGGCA
260 CTGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCA
104616 AAAATTTT
325 AAAATTTT
* * * * *
104624 GCAAAAAATGACCAGAAAGATTTTTCCTCAATTTTTAACTGCAATACTCATAAACAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * * * *
104689 TCAACACCAAAAAGATTGGAGTGCTTTACATGCTTCTAATATCTTTTTTTTTTAAATTTTTCCCA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATC-TTTTTTTTT-AATTTTTCCGA
* * *
104754 ATTGATTTTCGATAAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCTGTTTATCCAACG
129 ATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACG
* *
104819 TAGCTGAGATTTGGGATGATGAATAAGGATAATTCAATCG-GTCTTGGCGCCAAAAGTCATGCAA
194 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAAT-GAGTCTTGGCGCCAAAAATCATGCAA
* * * *
104883 AACTGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTAGG
258 AACTGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
104948 CAAAAATTTT
323 CAAAAATTTT
* *
104958 GCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
*
105023 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTTATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* * *
105088 TAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
* * * *
105153 GCTAAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTTGCGCCAAAATTCATGCAAAAC
196 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * *
105218 TAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATTGTGATGGTTAAATACACGATTTCGGCA
261 TGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTT-AGTACACGATTTCGGCA
105283 AAAATTTT
325 AAAATTTT
*
105291 GCAAAAATTGACCCGAAATG-TTTTTCCTCAATTTCTAACCGCAATACTCGTAAAAAATATATAA
1 GCAAAAATTGACCCGAAA-GATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAA
* * * *
105355 TTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACAT-ATATTTTTTAATTTTCCCGAA
65 TTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAA
** * * *
105419 TTAATTTTATATTAAACCGAAACATGATTCAAGTGCTCGTAAAACCAAATCCGTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
* * *
105484 AGCTGAGATTTGGAATGATTAATATGGATAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* *
105549 CTGAGCC---G----GG---GC---TTC-G----AAA-CGCG-T-TTTA--AGCACGATTTCGGC
260 CTGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTA-CACGATTTCGGC
*
105591 TAAAATTTT
324 AAAAATTTT
* * *
105600 GCAAAAATAGACCTGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * ** **
105665 TCAATGCCAAAAAGATT-AAGGGATTTACACGCTTCTAATAT-AATTTTTTT-ATTTTTTAGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* ** * * *
105727 TAA-TTTCTGATTAAAACGAAACATTTTTCAAATGCTCGTACAATCAAATCCCTTTAACCAACGT
131 TAATTTTC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
* * *
105791 GGCTTAGATTTGGAATGATAAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* *
105856 CTGAGCCGTGGGCCC-GGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGC
260 CTGAGCCG-GGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGC
105920 AAAAATTTT
324 AAAAATTTT
* * * *
105929 GCAAAAACTGACCCAAAATATTTTTCCTCAAATTTTAACCGCAATACTCGTAAAAAATTATATAA
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAA-TATATAA
* * * ** *
105994 TTCAACGCCAAAAAGATTTAAGGGCTTTGCATGCTTCTAACATATATTTTTTTAAAATTTTTCAG
65 TTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCT-A-ATATCTTTTTTTTTAATTTTTCCG
*
106059 AATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAACCAAATCCGTTTATCCAAC
128 AATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAAC
* * * *
106124 GTAGCTGAGATTTGGAATGATGAATATGGATAATTGAATGAGTCTTTGCGCCAAAATTCATGCAA
193 GTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
* * *
106189 AACTAAGTCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTATTACACGATTT---
258 AACTGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
106251 C----A----
323 CAAAAATTTT
* *
106253 GCAAAAATTGACCCGAAATG-TTTTTCCACAATTTCTAACCGCAATACTCGTAAAAAATATATAA
1 GCAAAAATTGACCCGAAA-GATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAA
* * *
106317 TTGAACGCCAAAAAGATTGAAGGACTTTGCACGCTTCT-A-A-CATTTTTTTT-ATTTTTCCGAA
65 TTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAA
*
106378 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCTGTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
*
106443 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGGGTCTTGGCGCCAAAAATCATGCAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * **
106508 CTGAGCCGTGGCCCCGGAATGCGATTTT-AGCCAAAAATCGTGATGGTTAGTACACGATTTTAGC
260 CTGAGCCGGGGCCCTGGAACGCG-TTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGC
106572 AAAAATTTT
324 AAAAATTTT
* * * * *
106581 GCAAAAATTGACCCGAAATACTTTTCCTCAATTTTTAACCGCAATACTCATAAAAATTATACAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * ** * *
106646 TCAACGCCAGAAAGATTGAAGGGCTTTTCACGCTTCTAACAT-TTTTTTTAAAAAATTTTTCTGT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTT--TTAATTTTTCCGA
106710 ATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG--T-TCCAACG
129 ATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACG
* * *
106772 TAGCTGAGATTTGGAATGATGAATAAGAATAATTGAATGAGACTTGGCGCCAAAAATCATGCAAA
194 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* * * *
106837 ACTGAGCCAGGG-CTTCGAAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGG
259 ACTGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
106901 CAAAAATTTT
323 CAAAAATTTT
* ** * * * * *
106911 GCAAAAACTGACCTAAAATATTTTTACTCAATTTTTCACCGCAATACTCGTAAATAACATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * ** * * *
106976 TCAACGCCAAAAAGATTTACGGGCTTTGCACGCTTGCTTCTA-ATATTTTTTTAATTTTTTCGAA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTT-CTAATATCTTTTTTTTTAATTTTTCCGAA
* ** *
107040 TTAATTTTCGATTAAATCGAAACATGATTCAGATGCTCGTAAAATCAAATCC-TCAAATCCAACA
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGT-TTATCCAACG
*
107104 TGGCT-ATGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
194 TAGCTGA-GATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
* * * * * * * *
107168 AATTGAGTCGGGGCCCCGGAACGCGTTTTCAACCAAAAATCGGGAT-GTAATGTACCCGATCTCG
258 AACTGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCG
*
107232 GCAAAACTTTT
322 GCAAAAATTTT
* * * * * *
107243 GCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGCAATACTCATAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * **** *
107308 TCAACACCAAAAAGATTGAAGGGCTTTACATGCTTCTAAT-T-TTTTTAAAAAAAAATTTT-CGC
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTT--TTTTAATTTTTCCG-
* *
107370 AATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAAT
128 AATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAAC
* * *
107435 GTAGCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTTGGCGCCAAAAGTCATGCAA
193 GTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
* * * *
107500 AACTGAGCCGTGG-CCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTAG
258 AACTGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCG
*
107564 GAAAAAATTTT
322 GCAAAAATTTT
*
107575 GCAAAAATTGACCCGAAAGATTTTTCCACAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
*
107640 TCAACGCCAAAAAGATTGAAGGG-TTATGCACGCTTCTAATATCTTTTTTTTTTAATTTTTCTGA
66 TCAACGCCAAAAAGATTGAAGGGCTT-TGCACGCTTCTAATATC-TTTTTTTTTAATTTTTCCGA
* * * *
107704 ATTAATTTGCGATTAAATCGAAACATGATTTAAATGCACGTAAAATCAAATACGTTTATCCAACG
129 ATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACG
* * *
107769 TGGCTTAGATTTGGAATGATGAATAAGAATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
194 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* * * * *
107834 ACTGAGCCAGGG-CCTCGAAACGCGTTTTCAGCCAAAATTCGT-A--ATAACGTACACGATTTCG
259 ACTGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCG
107895 GCAAAAATTTT
322 GCAAAAATTTT
*
107906 GCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * ** ** **
107971 TCAACGCCAAAAAGATT-AAAGGCTTTCCACGCTTCTAAGATAATTTTTTAAAATTTTTTAGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* * **
108035 TAA-TATCTAATTAAATCTTAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
131 TAATTTTC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
* * * *
108099 GGCTTAGATTTGGAATGATGAATACGGATAATTCAATGAGTTTTGGCGCCAAAAATCATGCAAAA
195 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * * * *
108164 CTGAGCCGTGGCTCC-GGAATGCGTTTTTAGGCAAAAATCGTGATGATTAGTATACGATTTCGGC
260 CTGAGCCGGGGC-CCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGC
*
108228 AAAACTTTT
324 AAAAATTTT
* * * * * * *
108237 GCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGAAATACTCATAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * * *
108302 TCAACACCAAAAAGATTGAAGGGCTTTGCATGCTTC---TAT-TTTTTTTTAAATTTTTCCCAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
*
108363 TAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
* * *
108428 GCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTTGGCGCCAAAAGTCATGCAAAAC
196 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * * *
108493 TGAGCCGTGG-CCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTAGGCA
261 TGAGCCGGGGCCCT-GGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCA
108557 AAAATTTT
325 AAAATTTT
* * * * *
108565 GCAAAAATTGACCCAAAAGATTTTTCCACAATTTTTAATCTCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
*
108630 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* * * * * * *
108695 TAATTTGCGATTAAATCGAATCATTATTAAAATGCTCGTAAAATCAAATCCCTTTAACCAACGTG
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
* * *
108760 GCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGACGCCAAAAATCATGCAAAAA
196 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * *
108825 TGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
261 TGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
108890 AAATTTT
326 AAATTTT
* * * * * * *
108897 GCAAAAACTGACCCAAAATATTTTTCCTTAAATTTTAACCGCAATACTCGTAAATAACATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
*
108962 TCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTAATA-------TTTT--TTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
* *
109018 TAATTTTCGATTAAATTGAAACATGATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
* * * *
109083 GCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTTATGCAAAAT
196 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* *
109148 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGAT-G---GTACACGATTTCAGCAA
261 TGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
109209 AAATTTT
326 AAATTTT
* * *
109216 GCAAAAATTGGCCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCATAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
* * *
109281 TCAACGCCAGAAAGATTGAAGGGCTTGCTTTGCACGCTTCT-A-A-CATTTTTTTTAATTTTTCT
66 TCAACGCCAAAAAGATTGAA-GG---GCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCC
* *
109343 GTATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TTAAATCCA
127 GAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTT-TATCCA
* * * * * *
109407 AGGTGGCTGATATTTGGGATGATGAATATA-GATAATTCAATGAGTCTTGGGGCCAAAAATCTTG
191 ACGTAGCTGAGATTTGGAATGATGAATA-AGGATAATTCAATGAGTCTTGGCGCCAAAAATCATG
109471 CAAAACTGA
255 CAAAACTGA
109480 ATATAGATAA
Statistics
Matches: 4809, Mismatches: 546, Indels: 287
0.85 0.10 0.05
Matches are distributed among these distances:
306 3 0.00
307 126 0.03
308 30 0.01
309 95 0.02
310 1 0.00
311 3 0.00
312 1 0.00
313 2 0.00
314 5 0.00
317 184 0.04
318 11 0.00
319 102 0.02
320 89 0.02
321 429 0.09
322 14 0.00
323 234 0.05
324 53 0.01
325 25 0.01
326 123 0.03
327 6 0.00
328 383 0.08
329 432 0.09
330 269 0.06
331 245 0.05
332 1108 0.23
333 368 0.08
334 288 0.06
335 176 0.04
336 4 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (332 bp):
GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTAATTTTTCCGAAT
TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGTA
GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
TGAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
AAATTTT
Found at i:107160 original size:662 final size:660
Alignment explanation
Indices: 103657--109479 Score: 7287
Period size: 662 Copynumber: 8.9 Consensus size: 660
103647 CACGATTTCG
*
103657 GCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
** * *
103722 TCAACGCCAAAAAGATTGAA-GG----GCACGCTT-CTAAT-ATCTTTTTTTTATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAAT
* * *
103780 TAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTA
*
103845 GCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
195 GCT-AGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * *
103910 TGAGCCGGGGCCTCGGAACGCGTTTTCAGCCAAAAATCCT-A-----ACGTACACGATTTCAGCA
259 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCGGCA
* * *
103969 AAAATTTTGCAAAAATTGACCCGAAATACTTTTCCTCAATTCTTAACTGCAATACTCGTAAATAA
323 AAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAA-AA
* *
104034 TATATAATTCAACACCAAAAAGATTGAAGGGCTTTGCACGCTTCT-A-ATATCTTTTT----TTT
387 TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTTAAAATTT
* * * * *
104093 TTCCGAATTAATTTGCGATTAATTCGAAACAT-TTATCAAATGCTCGTAAGATCATATCCGTTTA
452 TTCCGAATTAATTTTCGATTAAATCGAAACATGAT-TCAAATGCTCGTAAAATCAAATCCG-TTA
* * * * * *
104157 ACCAACATAGCTGAGATTTGTAATGATGAATTAGGATAATTGAATGAGTCTTGGCGCCAAAATTC
515 TCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATC
* * * *
104222 ATGCAAAACTGAGCCGAGGCCTCGAAACGCGTTTTCAGCCAAAAATCGTAATGGTTAGTACACGA
580 ATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGA
*
104287 TTTCGGTAAAAATTTT
645 TTTCGGCAAAAATTTT
* * *
104303 GCAAAAATTGACCCGAAAGATATTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
** * ** **
104368 TCAATTCCAAAAAGATTGAAGGGCTTT-CA-AC--GCTTCTAATA--TAATT--TTTTT-AAAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAAT
* * *
104424 T--TTTCCGATTAAATCGAAACATGATTCAATTGCTCGTAAAATCAAATCCCTTTATCCAACGTG
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCTTTATCCAACGTA
* * * *
104487 GCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAATCTTGGCGCAAAAAATCATGTAAAAT
195 GC-TAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * * * * * *
104552 TAAGCCGTGGCCCCGGAATGTGTTTTCAACCAAAAATCGTGATGTTTAGTACATGATTTCGGCAA
259 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
* * * * *
104617 AAATTTTGCAAAAAATGACCAGAAAGATTTTTCCTCAATTTTTAACTGCAATACTCATAAACAAT
324 AAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAA-AAT
* * * * * * * *
104682 ATATAATTCAACACCAAAAAGATTGGAGTGCTTTACATGCTTCTAATATCTTTTTTTTTTAAATT
388 ATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACA--TATTTTTTTAAAATT
* * * *
104747 TTTCCCAATTGATTTTCGATAAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCTGTTTA
451 TTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-TTA
* *
104812 TCCAACGTAGCTGAGATTTGGGATGATGAATAAGGATAATTCAATCG-GTCTTGGCGCCAAAAGT
515 TCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAAT-GAGTCTTGGCGCCAAAAAT
*
104876 CATGCAAAACTGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACG
579 CATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACG
*
104941 ATTTAGGCAAAAATTTT
644 ATTTCGGCAAAAATTTT
*
104958 GCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
** * * *
105023 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTT-CTAATATCTTTTTTTTTTATTTTTCCGAA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTA-ATATTTTTTTAATTTTTCCGAA
* * *
105087 TTAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGT
* * *
105152 AGCTAAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTTGCGCCAAAATTCATGCAAAA
194 AGCT-AGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * *
105217 CTAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATTGTGATGGTTAAATACACGATTTCGGC
258 CTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTT-AGTACACGATTTCGGC
* *
105282 AAAAATTTTGCAAAAATTGACCCGAAATGTTTTTCCTCAATTTCTAACCGCAATACTCGTAAAAA
322 AAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGT-AAAA
105347 ATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATATTTTTT--AAT
386 ATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATAT-TTTTTTAAAAT
* ** * * *
105410 TTTCCCGAATTAATTTTATATTAAACCGAAACATGATTCAAGTGCTCGTAAAACCAAATCCGTTT
450 TTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-TT
* * *
105475 ATCCAACGTAGCTGAGATTTGGAATGATTAATATGGATAATTGAATGAGTCTTGGCGCCAAAAAT
514 ATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAAT
* *
105540 CATGCAAAACTGAGCC---G----GG---GC---TTC-G----AAA-CGCG-T-TTTA--AGCAC
579 CATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTA-CAC
*
105582 GATTTCGGCTAAAATTTT
643 GATTTCGGCAAAAATTTT
* * * *
105600 GCAAAAATAGACCTGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * * ** **
105665 TCAATGCCAAAAAGATT-AAGGGATTTACACGCTT-CTAAT-ATAATTTTTTT-ATTTTTTAGAA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAAT-ATTTTTTTAATTTTTCCGAA
* ** * *
105726 TTAA-TTTCTGATTAAAACGAAACATTTTTCAAATGCTCGTACAATCAAATCCCTTTAACCAACG
130 TTAATTTTC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCTTTATCCAACG
* *
105790 TGGCTTAGATTTGGAATGATAAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
193 TAGC-TAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* *
105855 ACTGAGCCGTGGG-CCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGG
257 ACTGAGCCG-GGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
* * *
105919 CAAAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAAATTTTAACCGCAATACTCGTAAAA
321 CAAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGT-AAA
* *
105984 AATTATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCATGCTTCTAACATATATTTTTTTAA
385 AA-TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAAC--ATATTTTTTTAA
* *
106049 AATTTTTCAGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAACCAAATCCG
447 AATTTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG
* * *
106114 TTTATCCAACGTAGCTGAGATTTGGAATGATGAATATGGATAATTGAATGAGTCTTTGCGCCAAA
512 -TTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAA
* * * * * *
106179 ATTCATGCAAAACTAAGTCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTATTAC
576 AATCATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTAC
106244 ACGATTT---C----A----
641 ACGATTTCGGCAAAAATTTT
* * *
106253 GCAAAAATTGACCCGAAATG-TTTTTCCACAATTTCTAACCGCAATACTCGTAAAAAATATATAA
1 GCAAAAATTGACCCGAAA-GATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAA
* * * *
106317 TTGAACGCCAAAAAGATTGAAGGACTTTGCA--C--GCTTCTAACATTTTTTTTATTTTTCCGAA
65 TTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAA
*
106378 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCTGTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATC-CTTTATCCAACGT
*
106443 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGGGTCTTGGCGCCAAAAATCATGCAAAA
194 AGCT-AGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * **
106508 CTGAGCCGTGGCCCCGGAATGCGATTTT-AGCCAAAAATCGTGATGGTTAGTACACGATTTTAGC
258 CTGAGCCGGGGCCCCGGAACGCG-TTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGC
* *
106572 AAAAATTTTGCAAAAATTGACCCGAAATACTTTTCCTCAATTTTTAACCGCAATACTCATAAAAA
322 AAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAA
* * *
106637 TTATACAATTCAACGCCAGAAAGATTGAAGGGCTTTTCACGCTTCTAACAT-TTTTTTTAAAAAA
387 -TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTT--AAAA
* *
106701 TTTTTCTGTATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-T
449 TTTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTT
* * *
106765 -TCCAACGTAGCTGAGATTTGGAATGATGAATAAGAATAATTGAATGAGACTTGGCGCCAAAAAT
514 ATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAAT
** * *
106829 CATGCAAAACTGAGCCAG-GGCTTCGAAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACAC
579 CATGCAAAACTGAGCC-GTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACAC
106893 GATTTCGGCAAAAATTTT
643 GATTTCGGCAAAAATTTT
* ** * * * *
106911 GCAAAAACTGACCTAAAATATTTTTACTCAATTTTTCACCGCAATACTCGTAAATAACATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * *
106976 TCAACGCCAAAAAGATTTACGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTTCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAAT
* ** * *
107041 TAATTTTCGATTAAATCGAAACATGATTCAGATGCTCGTAAAATCAAATCCTCAAATCCAACATG
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCT-TTATCCAACGTA
*
107106 GCTATGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAT
195 GCTA-GATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * * * * *
107171 TGAGTCGGGGCCCCGGAACGCGTTTTCAACCAAAAATCGGGAT-GTAATGTACCCGATCTCGGCA
259 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCGGCA
* * * * * * *
107235 AAACTTTTGCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGCAATACTCATAAATAA
323 AAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAA-AA
* * * *
107300 TATATAATTCAACACCAAAAAGATTGAAGGGCTTTACATGCTTCT-A-AT-TTTTTTAAAAAAAA
387 TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTT---TAAAA
* *
107362 ATTTT-CGCAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGT
449 TTTTTCCG-AATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-
* * *
107426 TTATCCAATGTAGCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTTGGCGCCAAAA
512 TTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAA
* * * *
107491 GTCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACA
577 ATCATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACA
* *
107556 CGATTTAGGAAAAAATTTT
642 CGATTTCGGCAAAAATTTT
* *
107575 GCAAAAATTGACCCGAAAGATTTTTCCACAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* ** * *
107640 TCAACGCCAAAAAGATTGAAGGG-TTATGCACGCTT-CTAATATCTTTTTTTTTTAATTTTTCTG
66 TCAACGCCAAAAAGATTGAAGGGCTT-TGCACGCTTGCT--TCTAATATTTTTTTAATTTTTCCG
* * * *
107703 AATTAATTTGCGATTAAATCGAAACATGATTTAAATGCACGTAAAATCAAATACGTTTATCCAAC
128 AATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCTTTATCCAAC
* *
107768 GTGGCTTAGATTTGGAATGATGAATAAGAATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
192 GTAGC-TAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
* * * * * *
107833 AACTGAGCCAGGGCCTCGAAACGCGTTTTCAGCCAAAATTCGT-A--ATAACGTACACGATTTCG
256 AACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTA-GTACACGATTTCG
* *
107895 GCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAA
320 GCAAAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGT-AA
* * * *
107960 AAATATATAATTCAACGCCAAAAAGATT-AAAGGCTTTCCACGCTTCTAAGATAATTTTTTAAAA
384 AAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTTAAAA
** * * **
108024 TTTTTTAGAATTAA-TATCTAATTAAATCTTAACATGATTCAAATGCTCGTAAAATCAAATCCGT
449 TTTTTCCGAATTAATTTTC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-
* * * *
108088 TTATCCAACGTGGCTTAGATTTGGAATGATGAATACGGATAATTCAATGAGTTTTGGCGCCAAAA
512 TTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAA
* * * * * *
108153 ATCATGCAAAACTGAGCCGTGGCTCCGGAATGCGTTTTTAGGCAAAAATCGTGATGATTAGTATA
577 ATCATGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACA
*
108218 CGATTTCGGCAAAACTTTT
642 CGATTTCGGCAAAAATTTT
* * * * * *
108237 GCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGAAATACTCATAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * *
108302 TCAACACCAAAAAGATTGAAGGGCTTTGCA----TGCTTCT-ATTTTTTTTTAAATTTTTCCCAA
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTT-AATTTTTCCGAA
*
108362 TTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCAACGT
130 TTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGT
* * *
108427 AGCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTTGGCGCCAAAAGTCATGCAAAA
194 AGCT-AGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* * * * *
108492 CTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATTTAGGCA
258 CTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCA
* * * * *
108557 AAAATTTTGCAAAAATTGACCCAAAAGATTTTTCCACAATTTTTAATCTCAATACTCGTAAATAA
323 AAAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAA-AA
* * *
108622 TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTT
387 TATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTTAAAATTT
* * * * * *
108687 TTCCGAATTAATTTGCGATTAAATCGAATCATTATTAAAATGCTCGTAAAATCAAATCCCTTTAA
452 TTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCGTTAT
* * *
108752 CCAACGTGGCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGACGCCAAAAATCA
516 CCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCA
* *
108817 TGCAAAAATGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGAT
581 TGCAAAACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGAT
108882 TTCGGCAAAAATTTT
646 TTCGGCAAAAATTTT
* * * * * *
108897 GCAAAAACTGACCCAAAATATTTTTCCTTAAATTTTAACCGCAATACTCGTAAATAACATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
*
108962 TCAACGCCAAAAAGATTTAAGGGCTTTGCA--C--GCTTCTAATA---TTTT--TTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAAT
* *
109018 TAATTTTCGATTAAATTGAAACATGATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TTTATCCAACGTA
* * * *
109083 GCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTTATGCAAAAT
195 GCT-AGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
*
109148 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGAT-G---GTACACGATTTCAGCAA
259 TGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
* *
109209 AAATTTTGCAAAAATTGGCCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCATAAAAAAT
324 AAATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGT-AAAAAT
*
109274 ATATAATTCAACGCCAGAAAGATTGAAGGGCTTGCTTTGCACGCTTCTAACAT-TTTTTTT--AA
388 ATATAATTCAACGCCAAAAAGATTGAA-GG---GCTTTGCACGCTTCTAACATATTTTTTTAAAA
* *
109336 TTTTTCTGTATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCC-TT
449 TTTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTT
* * * * *
109400 AAATCCAAGGTGGCTGATATTTGGGATGATGAATATA-GATAATTCAATGAGTCTTGGGGCCAAA
514 --ATCCAACGTAGCTGAGATTTGGAATGATGAATA-AGGATAATTCAATGAGTCTTGGCGCCAAA
*
109464 AATCTTGCAAAACTGA
576 AATCATGCAAAACTGA
109480 ATATAGATAA
Statistics
Matches: 4535, Mismatches: 490, Indels: 298
0.85 0.09 0.06
Matches are distributed among these distances:
638 80 0.02
639 206 0.05
640 19 0.00
641 25 0.01
642 380 0.08
643 7 0.00
644 5 0.00
645 9 0.00
646 82 0.02
647 237 0.05
648 14 0.00
649 8 0.00
650 70 0.02
651 171 0.04
652 360 0.08
653 83 0.02
654 21 0.00
655 466 0.10
656 16 0.00
657 167 0.04
658 93 0.02
659 100 0.02
660 318 0.07
661 87 0.02
662 575 0.13
663 116 0.03
664 366 0.08
665 179 0.04
666 160 0.04
667 112 0.02
668 3 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (660 bp):
GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTGCTTCTAATATTTTTTTAATTTTTCCGAAT
TAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCTTTATCCAACGTAG
CTAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACTG
AGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAAAA
ATTTTGCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAAATATA
TAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATTTTTTTAAAATTTTTCC
GAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTATCCAAC
GTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAA
AACTGAGCCGTGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGG
CAAAAATTTT
Found at i:107541 original size:994 final size:988
Alignment explanation
Indices: 103657--109479 Score: 7613
Period size: 994 Copynumber: 5.9 Consensus size: 988
103647 CACGATTTCG
*
103657 GCAAAAATTGACCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
103722 TCAACGCCAAAAAGATTGAAGGG-----CACGCTTCTAATATCTTTTTTTT--ATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
* *
103780 TAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTTATCCAACGTA
131 TAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-TTATCCAACGTA
*
103845 GCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
195 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* * ** *
103910 TGAGCCGGGGCCTCGGAACGCGTTTTCAGCCAAAAATCCT-AACG----TACACGATTTCAGCAA
260 TGAGCC-GGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGCAA
* * * * *
103970 AAATTTTGCAAAAATTGACCCGAAATACTTTTCCTCAATTCTTAACTGCAATACTCGTAAATAAT
324 AAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAAT
* * *
104035 ATATAATTCAACACCAAAAAGATTGAAGGGCTTTGCACG---CTTCTA-ATATCTTTTT--TTTT
389 ATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTTCTATATATTTTTTTAATTTT
* * * * * *
104094 TCCGAATTAATTTGCGATTAATTCGAAACAT-TTATCAAATGCTCGTAAGATCATATCCGTTTAA
454 TCCGAATTAATTTTCGATTAAATCGAAACATGAT-TCAAATGCTCGTAAAATCAAATCCGTTTAT
* * *
104158 CCAACATAGCTGAGATTTGTAATGATGAATTAGGATAATTGAATGAGTCTTGGCGCCAAAATTCA
518 CCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTCA
* * * * *
104223 TGCAAAACTGAGCCGAGGCCTCGAAACGCGTTTTCAGCCAAAAATCGTAATGGTTAGTACACGAT
583 TGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTACACGAT
* * * *
104288 TTCGGTAAAAATTTTGCAAAAATTGACCCGAAAGATATTTCCCCAATTTTTAACCGCAATACTCG
648 TTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCA
** *
104353 TAAAAAATATATAATTCAATTCCAAAAAGATTGAAGGGCTTT-CAACGCTTCT-A-A----TATA
713 TAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGC-ACGCTTCTAACATTTTTTTA
** * *
104411 ATTTTTTTAA--AATTTTTCCGATTAAATCGAAACATGATTCAATTGCTCGTAAAATCAAATCCC
777 ATTTTTCCAATTAATTTTT--GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG
* * * *
104474 TTTATCCAACGTGGCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAATCTTGGCGCAAAA
840 TTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAA
* * * * * * * *
104539 AATCATGTAAAATTAAGCCGTGGCCCCGGAATGTGTTTTCAACCAAAAATCGTGATGTTTAGTAC
905 AATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTAC
* *
104604 ATGATTTCGGCAAAAATTTT
970 ACGATTT-AGCAAAAATTTT
* * * * *
104624 GCAAAAAATGACCAGAAAGATTTTTCCTCAATTTTTAACTGCAATACTCATAAACAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * * * *
104689 TCAACACCAAAAAGATTGGAGTGCTTTACATGCTTCTAATATCTTTTTTTTTTAAATTTTTCCCA
66 TCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATC--TTTTTTTTAAATTTTTCCGA
* * * *
104754 ATTGATTTTCGATAAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCTGTTTATCCAACG
129 ATTAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-TTATCCAACG
* *
104819 TAGCTGAGATTTGGGATGATGAATAAGGATAATTCAATCG-GTCTTGGCGCCAAAAGTCATGCAA
193 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAAT-GAGTCTTGGCGCCAAAAATCATGCAA
* * *
104883 AACTGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTAGG
257 AACTGAGCCG-GGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGG
* * * *
104948 CAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAT
321 CAAAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAAT
* ** * * *
105013 AATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTTTAT
386 AATATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTTCTATATATTTTTTTAAT
* * *
105078 TTTTCCGAATTAATTTGCGATTAAATCGAAACATTATTCAAATGCTCGTAAAATCATATCCGTTT
451 TTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTT
* *
105143 ATCCAACGTAGCTAAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTTGCGCCAAAATT
516 ATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATT
* * * *
105208 CATGCAAAACTAAGCCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATTGTGATGGTTAAATACAC
581 CATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGG-TAAGTACAC
*
105273 GATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAATG-TTTTTCCTCAATTTCTAACCGCAATA
645 GATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAA-GATTTTTCCTCAATTTTTAACCGCAATA
*
105337 CTCGTAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATATAT
709 CTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAAC--AT-T
* * * *
105402 TTTTTAATTTTCCCGAATTAATTTTAT-ATTAAACCGAAACATGATTCAAGTGCTCGTAAAACCA
771 TTTTTAATTTTTCC-AATTAATTTT-TGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCA
* * *
105466 AATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATTAATATGGATAATTGAATGAGTCTTGGC
834 AATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGC
* * * * *
105531 GCCAAAAATCATGCAAAACTGAGCCGGGGCTTCGAAACGCGTTTTAAG-C----A-C--GA---T
899 GCCAAAAATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGT
*
105585 T--T---CG-----GCTAAAATTTT
964 TAGTACACGATTTAGCAAAAATTTT
* * * *
105600 GCAAAAATAGACCTGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * ** **
105665 TCAATGCCAAAAAGATT-AAGGGATTTACACGCTTCTAATATAATTTTTTT--ATTTTTTAGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
* ** * * *
105727 TAATTT-CTGATTAAAACGAAACATTTTTCAAATGCTCGTACAATCAAATCCCTTTAACCAACGT
131 TAATTTGC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCGTTATCCAACGT
* * *
105791 GGCTTAGATTTGGAATGATAAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
194 AGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAA
* *
105856 CTGAGCCGTGGGCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGCA
259 CTGAGCCG-GGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGCA
* *
105921 AAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAAATTTTAACCGCAATACTCGTAAAAAA
323 AAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAA
* *
105986 TTATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCATGCTTCTAAC-ATATATTTTTTTAAA
388 -TATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCT-TCTATATATTTTTTT--A
* *
106050 ATTTTTCAGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAACCAAATCCGT
449 ATTTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGT
* *
106115 TTATCCAACGTAGCTGAGATTTGGAATGATGAATATGGATAATTGAATGAGTCTTTGCGCCAAAA
514 TTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAA
* * * * *
106180 TTCATGCAAAACTAAGTCGGGGCCCTGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTATTACA
579 TTCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTACA
* *
106245 CGATTT---C----A----GCAAAAATTGACCCGAAATG-TTTTTCCACAATTTCTAACCGCAAT
644 CGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAA-GATTTTTCCTCAATTTTTAACCGCAAT
* * *
106298 ACTCGTAAAAAATATATAATTGAACGCCAAAAAGATTGAAGGACTTTGCACGCTTCTAACATTTT
708 ACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATTTT
* *
106363 TTTTATTTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT
773 TTTAATTTTTCC-AATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT
* *
106428 CTGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGGGTCTTGGCGCC
837 CCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCC
* *
106493 AAAAATCATGCAAAACTGAGCCGTGGCCCCGGAATGCGATTTTAGCCAAAAATCGTGATGGTTAG
902 AAAAATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAG
106558 TACACGATTTTAGCAAAAATTTT
967 TACACGA-TTTAGCAAAAATTTT
* * * *
106581 GCAAAAATTGACCCGAAATACTTTTCCTCAATTTTTAACCGCAATACTCATAAA-AATTATACAA
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAA-TATATAA
* * * * *
106645 TTCAACGCCAGAAAGATTGAAGGGCTTTTCACGCTTCTAACAT-TTTTTTTAAAAAATTTTTCTG
65 TTCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATCTTTTTTT--TAAATTTTTCCG
* *
106709 TATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-T-TCCAACG
128 AATTAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTATCCAACG
* * *
106772 TAGCTGAGATTTGGAATGATGAATAAGAATAATTGAATGAGACTTGGCGCCAAAAATCATGCAAA
193 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
** *
106837 ACTGAGCCAGGGCTTCGAAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGC
258 ACTGAGCC-GGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGC
* * *
106902 AAAAATTTTGCAAAAACTGACCTAAAATATTTTTACTCAATTTTTCACCGCAATACTCGTAAATA
322 AAAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATA
* *
106967 ACATATAATTCAACGCCAAAAAGATTTACGGGCTTTGCACGCTTGCTTCTA-ATATTTTTTTAAT
387 ATATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTT-CTTCTATATATTTTTTTAAT
* * *
107031 TTTTTCGAATTAATTTTCGATTAAATCGAAACATGATTCAGATGCTCGTAAAATCAAATCC-TCA
451 TTTTCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGT-T
* * * *
107095 AATCCAACATGGCT-ATGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAA
515 TATCCAACGTAGCTGA-GATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAA
* * * * *
107159 ATCATGCAAAATTGAGTCGGGGCCCCGGAACGCGTTTTCAACCAAAAATCGGGAT-GTAATGTAC
579 TTCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAA-GTAC
* * * * * * *
107223 CCGATCTCGGCAAAACTTTTGCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGCAAT
643 ACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAAT
* * * *
107288 ACTCATAAATAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTACATGCTTCT-A-ATTTT
708 ACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATTTT
*
107351 TTTAAAAAAAAATTTTCGCAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAA
773 TTT------AATTTTTC-CAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAA
* * *
107416 TCAAATCCGTTTATCCAATGTAGCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTT
831 TCAAATCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTT
*
107481 GGCGCCAAAAGTCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGAT
896 GGCGCCAAAAATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGAT
*
107546 GGTTAGTACACGATTTAGGAAAAAATTTT
961 GGTTAGTACACGATTTA-GCAAAAATTTT
* *
107575 GCAAAAATTGACCCGAAAGATTTTTCCACAATTTTTAACCGCAATACTCGTAAAAAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
* * *
107640 TCAACGCCAAAAAGATTGAAGGG-TTATGCACGCTTCTAATATCTTTTTTTTTTAATTTTTCTGA
66 TCAACGCCAAAAAGATTGAAGGGCTT-TACACGCTTCTAATATC-TTTTTTTTAAATTTTTCCGA
* * *
107704 ATTAATTTGCGATTAAATCGAAACATGATTTAAATGCACGTAAAATCAAATACGTTTATCCAACG
129 ATTAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG-TTATCCAACG
* * *
107769 TGGCTTAGATTTGGAATGATGAATAAGAATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
193 TAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAA
* * * *
107834 ACTGAGCCAGGGCCTCGAAACGCGTTTTCAGCCAAAATTCGT-A---ATAACGTACACGATTTCG
258 ACTGAGCC-GGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAA--TACACGATTTCG
* * * *
107895 GCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCCCAATTTTTAACCGCAATACTCGTAAA
320 GCAAAAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAA
* * * *** *
107960 AAATATATAATTCAACGCCAAAAAGA-TTAAAGGCTTTCCACGCTTCTAAGATA-ATTTTTTAAA
385 TAATATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTTCTATATATTTTTT-TA
** * * **
108023 ATTTTTTAGAATTAA-TATCTAATTAAATCTTAACATGATTCAAATGCTCGTAAAATCAAATCCG
449 ATTTTTCCGAATTAATTTTC-GATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCG
* * * * *
108087 TTTATCCAACGTGGCTTAGATTTGGAATGATGAATACGGATAATTCAATGAGTTTTGGCGCCAAA
513 TTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAA
* * * * * * * * *
108152 AATCATGCAAAACTGAGCCGTGGCTCCGGAATGCGTTTTTAGGCAAAAATCGTGATGATTAGTAT
578 ATTCATGCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTAC
* * * * * *
108217 ACGATTTCGGCAAAACTTTTGCAAAAAATAACCAGAAAGATTTTTCCTCAATTTTTAACTGAAAT
643 ACGATTTCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAAT
* * * **
108282 ACTCATAAATAATATATAATTCAACACCAAAAAGATTGAAGGGCTTTGCATGCTTCT-ATTTTTT
708 ACTCATAAAAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATTTT
108346 TTTAAATTTTTCCCAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAA
773 TTT-AATTTTT-CCAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAA
* *
108411 TCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAGGGATAATTCAATGGGTCTTGGCGC
836 TCCGTTTATCCAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGC
*
108476 CAAAAGTCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTA
901 CAAAAATCATGCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTA
108541 GTACACGATTTAGGCAAAAATTTT
966 GTACACGATTTA-GCAAAAATTTT
* * * *
108565 GCAAAAATTGACCCAAAAGATTTTTCCACAATTTTTAATCTCAATACTCGTAAATAATATATAAT
1 GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
*
108630 TCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
66 TCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
* * * * * *
108695 TAATTTGCGATTAAATCGAATCATTATTAAAATGCTCGTAAAATCAAATCCCTTTAACCAACGTG
131 TAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAAT-CCGTTATCCAACGTA
* * *
108760 GCTTAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGACGCCAAAAATCATGCAAAAA
195 GCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAAC
* *
108825 TGAGCCGTGGCCCCGGAATGCGTTTTCAGCCAAAAATCGTGATGGTTAGTACACGATTTCGGCAA
260 TGAGCCG-GGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGCAA
* * *
108890 AAATTTTGCAAAAACTGACCCAAAATATTTTTCCTTAAATTTTAACCGCAATACTCGTAAATAAC
324 AAATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAAT
108955 ATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACG---CTTCTA-ATA---TTTT--TTTT
389 ATATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTTCTATATATTTTTTTAATTTT
* *
109011 TCCGAATTAATTTTCGATTAAATTGAAACATGATTCAAATGCTCGTAAAATCATATCCGTTTATC
454 TCCGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATC
*
109076 CAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTTAT
519 CAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTCAT
*
109141 GCAAAATTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGAT-G---GTACACGATT
584 GCAAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTACACGATT
* * *
109202 TCAGCAAAAATTTTGCAAAAATTGGCCCGAAATATTTTTCCTCAATTTTTAACCGCAATACTCAT
649 TCGGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCAT
*
109267 AAAAAATATATAATTCAACGCCAGAAAGATTGAAGGGCTTGCTTTGCACGCTTCTAACATTTTTT
714 AAAAAATATATAATTCAACGCCAAAAAGATTGAA-GG---GCTTTGCACGCTTCTAACA-TTTTT
** *
109332 TTAATTTTTCTGTATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATC
774 TTAATTTTTC-CAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATC
* * * * * *
109397 C-TTAAATCCAAGGTGGCTGATATTTGGGATGATGAATATA-GATAATTCAATGAGTCTTGGGGC
838 CGTT-TATCCAACGTAGCTGAGATTTGGAATGATGAATA-AGGATAATTCAATGAGTCTTGGCGC
*
109460 CAAAAATCTTGCAAAACTGA
901 CAAAAATCATGCAAAACTGA
109480 ATATAGATAA
Statistics
Matches: 4304, Mismatches: 414, Indels: 259
0.86 0.08 0.05
Matches are distributed among these distances:
959 159 0.04
960 3 0.00
962 102 0.02
964 1 0.00
965 1 0.00
966 1 0.00
967 81 0.02
970 5 0.00
971 239 0.06
972 69 0.02
973 20 0.00
974 186 0.04
975 23 0.01
976 248 0.06
977 3 0.00
978 5 0.00
979 269 0.06
980 4 0.00
981 249 0.06
982 210 0.05
983 178 0.04
984 137 0.03
985 67 0.02
986 4 0.00
987 170 0.04
988 128 0.03
989 181 0.04
990 403 0.09
991 98 0.02
992 16 0.00
993 25 0.01
994 648 0.15
995 108 0.03
996 9 0.00
997 117 0.03
998 130 0.03
1000 6 0.00
1001 1 0.00
ACGTcount: A:0.35, C:0.17, G:0.16, T:0.31
Consensus pattern (988 bp):
GCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATATATAAT
TCAACGCCAAAAAGATTGAAGGGCTTTACACGCTTCTAATATCTTTTTTTTAAATTTTTCCGAAT
TAATTTGCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTATCCAACGTAG
CTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCATGCAAAACT
GAGCCGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTTAATACACGATTTCGGCAAAA
ATTTTGCAAAAACTGACCCAAAATATTTTTCCTCAATTTTTAACCGCAATACTCGTAAATAATAT
ATAATTCAACGCCAAAAAGATTTAAGGGCTTTGCACGCTTCTTCTATATATTTTTTTAATTTTTC
CGAATTAATTTTCGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATCCA
ACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTGAATGAGTCTTGGCGCCAAAATTCATGC
AAAACTGAGCCGGGGCCCCGGAACGCGTTTTCAGCCAAAAATCGTGATGGTAAGTACACGATTTC
GGCAAAAATTTTGCAAAAATTGACCCGAAAGATTTTTCCTCAATTTTTAACCGCAATACTCATAA
AAAATATATAATTCAACGCCAAAAAGATTGAAGGGCTTTGCACGCTTCTAACATTTTTTTAATTT
TTCCAATTAATTTTTGATTAAATCGAAACATGATTCAAATGCTCGTAAAATCAAATCCGTTTATC
CAACGTAGCTGAGATTTGGAATGATGAATAAGGATAATTCAATGAGTCTTGGCGCCAAAAATCAT
GCAAAACTGAGCCGTGGCCTCGGAATGCGTTTTTAGCCAAAAATCGTGATGGTTAGTACACGATT
TAGCAAAAATTTT
Found at i:109567 original size:52 final size:52
Alignment explanation
Indices: 109489--110022 Score: 835
Period size: 52 Copynumber: 10.3 Consensus size: 52
109479 AATATAGATA
* *
109489 ACTAAAT-TTTTAAAAATGTTTGGAGGGACAGCCCTCATCGGTTTCCCTAATT
1 ACTAAATCTTTT-AAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
*
109541 ACTAAATCTTTTAAAATGTTGGGAGGGACAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
*
109593 ACTAAAT-TTTTAAAATTGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAA-TGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
109645 ACTAAATCTTTTAAAATGTTCGGAGGG-CAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
* *
109696 ACTAACT-TTTTAAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCTTAATT
1 ACTAAATCTTTT-AAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
* *
109748 ACTAAATCTTTAAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCTTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
109800 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
* *
109852 ACTAAATCTTTAAAAATGTTCAGAGGGACAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
* * * * *
109904 ACTAAGTCTTTTAAAAGGTTTC-AAGGGACAACCCTCATCGATCTCCCTAATT
1 ACTAAATCTTTTAAAATG-TTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
* *
109956 ACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATT
1 ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
*
110008 ACTAAATATTTTAAA
1 ACTAAATCTTTTAAA
110023 TCGGTCTCCC
Statistics
Matches: 447, Mismatches: 27, Indels: 16
0.91 0.06 0.03
Matches are distributed among these distances:
50 4 0.01
51 55 0.12
52 370 0.83
53 18 0.04
ACGTcount: A:0.29, C:0.23, G:0.16, T:0.32
Consensus pattern (52 bp):
ACTAAATCTTTTAAAATGTTCGGAGGGACAGCCCTCATCGGTCTCCCTAATT
Found at i:110028 original size:30 final size:30
Alignment explanation
Indices: 109992--110049 Score: 107
Period size: 30 Copynumber: 1.9 Consensus size: 30
109982 GACAGCCCTC
109992 ATCGGTCTCCCTAATTACTAAATATTTTAA
1 ATCGGTCTCCCTAATTACTAAATATTTTAA
*
110022 ATCGGTCTCCCTAATTACTAAATCTTTT
1 ATCGGTCTCCCTAATTACTAAATATTTT
110050 TAAAATGTTT
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
30 27 1.00
ACGTcount: A:0.29, C:0.22, G:0.07, T:0.41
Consensus pattern (30 bp):
ATCGGTCTCCCTAATTACTAAATATTTTAA
Found at i:110083 original size:83 final size:82
Alignment explanation
Indices: 109940--110105 Score: 296
Period size: 83 Copynumber: 2.0 Consensus size: 82
109930 GACAACCCTC
109940 ATCGATCTCCCTAATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTA
1 ATCGATCTCCCTAATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTA
110005 ATTACTAAATATTTTAA
66 ATTACTAAATATTTTAA
* *
110022 ATCGGTCTCCCTAATTACTAAATCTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCT
1 ATCGATCTCCCTAATTACTAAA-CCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCT
*
110087 AATTACTAAATCTTTTAA
65 AATTACTAAATATTTTAA
110105 A
1 A
110106 ATGTTTGGAG
Statistics
Matches: 80, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
82 21 0.26
83 59 0.74
ACGTcount: A:0.30, C:0.23, G:0.13, T:0.35
Consensus pattern (82 bp):
ATCGATCTCCCTAATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTA
ATTACTAAATATTTTAA
Found at i:110129 original size:135 final size:134
Alignment explanation
Indices: 109888--110157 Score: 450
Period size: 135 Copynumber: 2.0 Consensus size: 134
109878 GACAGCCCTC
*
109888 ATCGGTCTCCCTAATTACTAAGTCTTTTAAAAGGTTTCAAGGGACAACCCTCATCGATCTCCCTA
1 ATCGGTCTCCCTAATTACTAAATCTTTTAAAAGGTTTCAAGGGACAACCCTCATCGATCTCCCTA
109953 ATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATTACTAAATATT
66 ATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATTACTAAATATT
110018 TTAA
131 TTAA
* ** * *
110022 ATCGGTCTCCCTAATTACTAAATCTTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCT
1 ATCGGTCTCCCTAATTACTAAATC-TTTTAAAAGGTTTCAAGGGACAACCCTCATCGATCTCCCT
* * *
110087 AATTACTAAATCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATTACTATATCT
65 AATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATTACTAAATAT
110152 TTTAA
130 TTTAA
110157 A
1 A
110158 ATGTTTGGAG
Statistics
Matches: 126, Mismatches: 9, Indels: 1
0.93 0.07 0.01
Matches are distributed among these distances:
134 23 0.18
135 103 0.82
ACGTcount: A:0.29, C:0.23, G:0.14, T:0.34
Consensus pattern (134 bp):
ATCGGTCTCCCTAATTACTAAATCTTTTAAAAGGTTTCAAGGGACAACCCTCATCGATCTCCCTA
ATTACTAAACCTTTTAAAATGTTTGGAGGGACAGCCCTCATCGGTCTCCCTAATTACTAAATATT
TTAA
Found at i:110246 original size:51 final size:51
Alignment explanation
Indices: 110022--110515 Score: 711
Period size: 51 Copynumber: 9.5 Consensus size: 51
110012 AATATTTTAA
110022 ATCGGTCTCCCTAATTACTAAATCTTTTTAAAATGTTTGGAGGGACAGCCCTC
1 ATCGGTCT-CCTAATTACTAAAT-TTTTTAAAATGTTTGGAGGGACAGCCCTC
*
110075 ATCGGTCTCCCTAATTACTAAATCTTTTAAAATGTTTGGAGGGACAGCCCTC
1 ATCGGTCT-CCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* * *
110127 ATCGGTCTCCCTAATTACTATATCTTTTAAAATGTTTGGAGGGACAACCCTC
1 ATCGGTCT-CCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* * *
110179 ATCGGTCTCCCTAATTACTAAATATTTAAAAATATTTGGAGGGACAGCCCTC
1 ATCGGTCT-CCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* *
110231 TTCGGTCTCCTAATTACTAAATATTTTAAAATGTTTGGAGGGACAGCCCTC
1 ATCGGTCTCCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* * *
110282 ATCGGTCTCCTAATTACTAAACTTTTTAAAACGTTTGAAGGGACAGCCCTC
1 ATCGGTCTCCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* * * *
110333 ATTGATCTCCTAATTACTAAATTTTTTAAAACGTTTGGAGGGACATCCCTC
1 ATCGGTCTCCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
* * *
110384 ATCAGTCTCCTAATTACTACATTTTTTTTTAAAATGTTTGGAGGGATAGCCCTC
1 ATCGGTCTCCTAATTACTA-A--ATTTTTTAAAATGTTTGGAGGGACAGCCCTC
*
110438 ATCAGTCTCCTAATTACTAGAATTTTTT-AAATGTTTGGAGGGACAGCCCTC
1 ATCGGTCTCCTAATTACTA-AATTTTTTAAAATGTTTGGAGGGACAGCCCTC
110489 ATCCGGTCTCCTAATTACTAAATTTTT
1 AT-CGGTCTCCTAATTACTAAATTTTT
110516 AAACTTTTTA
Statistics
Matches: 405, Mismatches: 32, Indels: 10
0.91 0.07 0.02
Matches are distributed among these distances:
51 180 0.44
52 155 0.38
53 23 0.06
54 47 0.12
ACGTcount: A:0.28, C:0.21, G:0.16, T:0.35
Consensus pattern (51 bp):
ATCGGTCTCCTAATTACTAAATTTTTTAAAATGTTTGGAGGGACAGCCCTC
Found at i:111434 original size:34 final size:36
Alignment explanation
Indices: 111396--111479 Score: 100
Period size: 42 Copynumber: 2.2 Consensus size: 36
111386 TCTCACTTCA
111396 CTCATTCC-A-ACATAATCTTTGACTGCCCCTTTAC
1 CTCATTCCTATACATAATCTTTGACTGCCCCTTTAC
111430 CTCATTACCCTTATATTACATAATCTTTGACTGCCCCTTTAC
1 CTCATT--CC---TA-TACATAATCTTTGACTGCCCCTTTAC
111472 CTCATTCC
1 CTCATTCC
111480 CCTTATTAAA
Statistics
Matches: 42, Mismatches: 0, Indels: 10
0.81 0.00 0.19
Matches are distributed among these distances:
34 6 0.14
36 2 0.05
40 3 0.07
42 31 0.74
ACGTcount: A:0.23, C:0.35, G:0.05, T:0.38
Consensus pattern (36 bp):
CTCATTCCTATACATAATCTTTGACTGCCCCTTTAC
Found at i:111464 original size:42 final size:42
Alignment explanation
Indices: 111405--111485 Score: 153
Period size: 42 Copynumber: 1.9 Consensus size: 42
111395 ACTCATTCCA
111405 ACATAATCTTTGACTGCCCCTTTACCTCATTACCCTTATATT
1 ACATAATCTTTGACTGCCCCTTTACCTCATTACCCTTATATT
*
111447 ACATAATCTTTGACTGCCCCTTTACCTCATTCCCCTTAT
1 ACATAATCTTTGACTGCCCCTTTACCTCATTACCCTTAT
111486 TAAACCTACT
Statistics
Matches: 38, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
42 38 1.00
ACGTcount: A:0.22, C:0.33, G:0.05, T:0.40
Consensus pattern (42 bp):
ACATAATCTTTGACTGCCCCTTTACCTCATTACCCTTATATT
Found at i:111762 original size:38 final size:38
Alignment explanation
Indices: 111711--111819 Score: 122
Period size: 38 Copynumber: 3.0 Consensus size: 38
111701 GGTTAAAGAC
111711 ATACTTAACAGACCTATATATTATACTGGTCATCAGTT
1 ATACTTAACAGACCTATATATTATACTGGTCATCAGTT
* * * **
111749 ATACTTAACAGACC--TAT-TCATA--GGTTA-AAGAC
1 ATACTTAACAGACCTATATATTATACTGGTCATCAGTT
*
111781 ATACTTAACAGACATATATATTATACTGGTCATCAGTT
1 ATACTTAACAGACCTATATATTATACTGGTCATCAGTT
111819 A
1 A
111820 AACATCAGTC
Statistics
Matches: 54, Mismatches: 11, Indels: 12
0.70 0.14 0.16
Matches are distributed among these distances:
32 15 0.28
33 4 0.07
34 3 0.06
35 8 0.15
36 3 0.06
37 4 0.07
38 17 0.31
ACGTcount: A:0.38, C:0.17, G:0.11, T:0.34
Consensus pattern (38 bp):
ATACTTAACAGACCTATATATTATACTGGTCATCAGTT
Found at i:111790 original size:32 final size:32
Alignment explanation
Indices: 111691--111793 Score: 107
Period size: 32 Copynumber: 3.0 Consensus size: 32
111681 ATATTTCAAG
111691 CCTATTCATAGGTTAAAGACATACTTAACAGA
1 CCTATTCATAGGTTAAAGACATACTTAACAGA
* * * **
111723 CCTATATATTATACTGGTCATCAGTTATACTTAACAGA
1 CC--TAT-TCATA--GGTTA-AAGACATACTTAACAGA
111761 CCTATTCATAGGTTAAAGACATACTTAACAGA
1 CCTATTCATAGGTTAAAGACATACTTAACAGA
111793 C
1 C
111794 ATATATATTA
Statistics
Matches: 55, Mismatches: 10, Indels: 12
0.71 0.13 0.16
Matches are distributed among these distances:
32 17 0.31
33 4 0.07
34 3 0.05
35 8 0.15
36 3 0.05
37 4 0.07
38 16 0.29
ACGTcount: A:0.38, C:0.19, G:0.12, T:0.31
Consensus pattern (32 bp):
CCTATTCATAGGTTAAAGACATACTTAACAGA
Found at i:112487 original size:47 final size:47
Alignment explanation
Indices: 112430--112523 Score: 161
Period size: 47 Copynumber: 2.0 Consensus size: 47
112420 ACAATAATGG
*
112430 CAAGATAGCAGTATATGAAGGAAAATCTAAAGTTTTATAACAAGGTA
1 CAAGAAAGCAGTATATGAAGGAAAATCTAAAGTTTTATAACAAGGTA
* *
112477 CAAGAAAGCAGTGTATGAAGGAAAATCTAAAGTTTTATAATAAGGTA
1 CAAGAAAGCAGTATATGAAGGAAAATCTAAAGTTTTATAACAAGGTA
112524 AAAGGCTATA
Statistics
Matches: 44, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
47 44 1.00
ACGTcount: A:0.47, C:0.07, G:0.20, T:0.26
Consensus pattern (47 bp):
CAAGAAAGCAGTATATGAAGGAAAATCTAAAGTTTTATAACAAGGTA
Found at i:117132 original size:47 final size:46
Alignment explanation
Indices: 117079--117258 Score: 134
Period size: 48 Copynumber: 3.8 Consensus size: 46
117069 CCCAATGAAG
117079 CCAAAAT-TCGAAGGCTAACCATCATGACCGATGGTGGACAAAATATA
1 CCAAAATATC-AAGGCTAACCATCATGACCGATGGTGGACAAAAT-TA
* * *
117126 CCAAAATAGTCAAGGCTAATCATCATGACTC-AAGGTGGCCAAAATTA
1 CCAAAATA-TCAAGGCTAACCATCATGAC-CGATGGTGGACAAAATTA
** * * ** *
117173 GCTGAAAT-TCAAAAGCTAACCATCATAATTGATGGT-GACCAAAATTTG
1 -CCAAAATATC-AAGGCTAACCATCATGACCGATGGTGGA-CAAAA-TTA
* **
117221 CCAAAATAACTAAGGCTAACCATCATGATTGATGGTGG
1 CCAAAATATC-AAGGCTAACCATCATGACCGATGGTGG
117259 CTTAAAATAT
Statistics
Matches: 104, Mismatches: 19, Indels: 18
0.74 0.13 0.13
Matches are distributed among these distances:
46 3 0.03
47 37 0.36
48 60 0.58
49 4 0.04
ACGTcount: A:0.39, C:0.19, G:0.18, T:0.23
Consensus pattern (46 bp):
CCAAAATATCAAGGCTAACCATCATGACCGATGGTGGACAAAATTA
Found at i:117993 original size:48 final size:47
Alignment explanation
Indices: 117922--118187 Score: 148
Period size: 48 Copynumber: 5.6 Consensus size: 47
117912 TATGATGGAA
* * *
117922 AAAATTGCTAATGCTAACAATCACAACCGATGTTGACCAAAATTGGCC
1 AAAA-TGCTAAAGCTAACCATCACGACCGATGTTGACCAAAATTGGCC
* * ** *
117970 AAAAAT-TTCAAGTCTAACCATCACGACTAATGGTT-ACAAAAATTGGCC
1 -AAAATGCTAAAG-CTAACCATCACGACCGAT-GTTGACCAAAATTGGCC
* *
118018 AAAATGGCTAAAGCTAACCATCATGACCGATGGTGACCAAAATT-GCTC
1 AAAAT-GCTAAAGCTAACCATCACGACCGATGTTGACCAAAATTGGC-C
* * ** * * *
118066 AAAAT--TAAATGGC-AGATCATCACAATTGATGGTGATCAAAATTGACC
1 AAAATGCTAAA--GCTA-ACCATCACGACCGATGTTGACCAAAATTGGCC
* * * * * * *
118113 AAAATGACCAAGGTTAACCATCACGACTGATGGTGATCAAAACTGGCC
1 AAAATG-CTAAAGCTAACCATCACGACCGATGTTGACCAAAATTGGCC
* * * *
118161 AAAATTCCAATGCTAACCATCATGACC
1 AAAATGCTAAAGCTAACCATCACGACC
118188 CATTATGGCC
Statistics
Matches: 168, Mismatches: 35, Indels: 30
0.72 0.15 0.13
Matches are distributed among these distances:
45 4 0.02
46 1 0.01
47 59 0.35
48 90 0.54
49 12 0.07
50 2 0.01
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.23
Consensus pattern (47 bp):
AAAATGCTAAAGCTAACCATCACGACCGATGTTGACCAAAATTGGCC
Found at i:118182 original size:95 final size:93
Alignment explanation
Indices: 117934--118182 Score: 225
Period size: 95 Copynumber: 2.6 Consensus size: 93
117924 AATTGCTAAT
* * * *
117934 GCTAACAATCACAACCGATGTTGACCAAAATTGGCCAAAAATTTCAA-GTCTAACCATCACGACT
1 GCTAACCATCACGACCGATGGTGACCAAAA-TGGCC-AAAA-TTCAATG-CTAACCATCACAACT
* * * *
117998 AATGGTTACAAAAATTGGCCAAAATGGCTAAA
62 AATGGTGACAAAAATTGACCAAAATGACCAAA
* * * * * *
118030 GCTAACCATCATGACCGATGGTGACCAAAATTGCTCAAAATTAAATGGC-AGATCATCACAATTG
1 GCTAACCATCACGACCGATGGTGACCAAAATGGC-CAAAATTCAAT-GCTA-ACCATCACAACTA
*
118094 ATGGTGATC-AAAATTGACCAAAATGACCAAG
63 ATGGTGA-CAAAAATTGACCAAAATGACCAAA
* * *
118125 GTTAACCATCACGACTGATGGTGATCAAAACTGGCCAAAATTCCAATGCTAACCATCA
1 GCTAACCATCACGACCGATGGTGACCAAAA-TGGCCAAAATT-CAATGCTAACCATCA
118183 TGACCCATTA
Statistics
Matches: 123, Mismatches: 22, Indels: 17
0.76 0.14 0.10
Matches are distributed among these distances:
94 5 0.04
95 82 0.67
96 36 0.29
ACGTcount: A:0.40, C:0.22, G:0.16, T:0.22
Consensus pattern (93 bp):
GCTAACCATCACGACCGATGGTGACCAAAATGGCCAAAATTCAATGCTAACCATCACAACTAATG
GTGACAAAAATTGACCAAAATGACCAAA
Found at i:118237 original size:38 final size:37
Alignment explanation
Indices: 118158--118240 Score: 94
Period size: 38 Copynumber: 2.2 Consensus size: 37
118148 ATCAAAACTG
* * * *
118158 GCCAAAATTCCAATGCTAACCATCATGACCCATTATG
1 GCCAAAATACCAATGCTAACCATCACGACCCATGATA
** *
118195 GCCAAAATGACCAATGCTAACCATCACGACTGATGGTA
1 GCCAAAAT-ACCAATGCTAACCATCACGACCCATGATA
118233 GCCAAAAT
1 GCCAAAAT
118241 TTGCCAAAAT
Statistics
Matches: 38, Mismatches: 7, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
37 8 0.21
38 30 0.79
ACGTcount: A:0.37, C:0.28, G:0.14, T:0.20
Consensus pattern (37 bp):
GCCAAAATACCAATGCTAACCATCACGACCCATGATA
Found at i:118329 original size:48 final size:48
Alignment explanation
Indices: 118195--118321 Score: 157
Period size: 48 Copynumber: 2.6 Consensus size: 48
118185 ACCCATTATG
* * * *
118195 GCCAAAAT-GACCAATGCTAACCATCACGACTGATGGTAGCCAAAATTT
1 GCCAAAATAG-CCAAGGCTAACCATCACGACTGATGGTGGCTAAAATAT
* * *
118243 GCCAAAATAGCAAAGGCTAACAATCACAACTGATGGTGGCTAAAATAT
1 GCCAAAATAGCCAAGGCTAACCATCACGACTGATGGTGGCTAAAATAT
* *
118291 GCTAAAATCGCCAAGGCTAACCATCACGACT
1 GCCAAAATAGCCAAGGCTAACCATCACGACT
118322 TAAGGTGGAT
Statistics
Matches: 66, Mismatches: 12, Indels: 2
0.82 0.15 0.03
Matches are distributed among these distances:
48 65 0.98
49 1 0.02
ACGTcount: A:0.39, C:0.24, G:0.17, T:0.19
Consensus pattern (48 bp):
GCCAAAATAGCCAAGGCTAACCATCACGACTGATGGTGGCTAAAATAT
Found at i:119610 original size:47 final size:45
Alignment explanation
Indices: 119479--119620 Score: 122
Period size: 47 Copynumber: 3.0 Consensus size: 45
119469 TCGCAACATA
* *
119479 GATCAATATTCCAAGGCTAACAATCACGACTAATGGTTGCAAAAATT
1 GATCAAAATTCCAAGGCTAACCATCACGACT-ATGG-TGCAAAAATT
** * * * * **
119526 GGCCAAAATGGCTAAGGCTAACCATCACAATCGATGGTGACCCAAATT
1 GATCAAAAT-TCCAAGGCTAACCATCACGA-CTATGGTG-CAAAAATT
*
119574 GATCAAAATTCCAAGGCTAACCATCACGACCTATGGTGGCGAAAATT
1 GATCAAAATTCCAAGGCTAACCATCACGA-CTATGGT-GCAAAAATT
119621 ACCAGCGCTA
Statistics
Matches: 72, Mismatches: 19, Indels: 8
0.73 0.19 0.08
Matches are distributed among these distances:
47 37 0.51
48 34 0.47
49 1 0.01
ACGTcount: A:0.37, C:0.23, G:0.18, T:0.22
Consensus pattern (45 bp):
GATCAAAATTCCAAGGCTAACCATCACGACTATGGTGCAAAAATT
Found at i:119931 original size:48 final size:48
Alignment explanation
Indices: 119836--119931 Score: 113
Period size: 48 Copynumber: 2.0 Consensus size: 48
119826 CAACCTATAG
* * * **
119836 TGGCCAAAATGGCCAATGCTAACCATCATGACTGATGGTAGCCAAAAT
1 TGGCCAAAATAGCCAAAGCTAACCATCACGACTGATAATAGCCAAAAT
* *
119884 TGGCCAAAATAG-CAAAGACTAACCATCACGATTGATAATAGCTAAAAT
1 TGGCCAAAATAGCCAAAG-CTAACCATCACGACTGATAATAGCCAAAAT
119932 ATGACAATAT
Statistics
Matches: 40, Mismatches: 7, Indels: 2
0.82 0.14 0.04
Matches are distributed among these distances:
47 4 0.10
48 36 0.90
ACGTcount: A:0.41, C:0.21, G:0.18, T:0.21
Consensus pattern (48 bp):
TGGCCAAAATAGCCAAAGCTAACCATCACGACTGATAATAGCCAAAAT
Found at i:120873 original size:84 final size:86
Alignment explanation
Indices: 120700--120875 Score: 187
Period size: 84 Copynumber: 2.1 Consensus size: 86
120690 CCATTACGAT
* * * **
120700 CAAAATTGGCCAAAAAATTCGAAGGCTAACCATCACAATCTATGGTGGCAAAATAGGCCAAGGCT
1 CAAAATTGGCCAAAAAAGTCGAAGGCTAACCATCACAATCGATGGTGACAAAATAGGCCAAAACT
* *
120765 AACAATCACCACCGGTGTGAC
66 AACAATCACAACCGATGTGAC
* * ** **
120786 CAAAATTGG-CAAAAAAGTC-AAGGTTAACTATCATGATCGATGGTGACAAAA-ATTCCAAAACT
1 CAAAATTGGCCAAAAAAGTCGAAGGCTAACCATCACAATCGATGGTGACAAAATAGGCCAAAACT
* *
120848 AACTATCACAACCGATGGTGGC
66 AACAATCACAACCGAT-GTGAC
120870 CAAAAT
1 CAAAAT
120876 GTTAAAGGCT
Statistics
Matches: 74, Mismatches: 15, Indels: 4
0.80 0.16 0.04
Matches are distributed among these distances:
83 20 0.27
84 36 0.49
85 9 0.12
86 9 0.12
ACGTcount: A:0.41, C:0.22, G:0.18, T:0.19
Consensus pattern (86 bp):
CAAAATTGGCCAAAAAAGTCGAAGGCTAACCATCACAATCGATGGTGACAAAATAGGCCAAAACT
AACAATCACAACCGATGTGAC
Found at i:130869 original size:27 final size:27
Alignment explanation
Indices: 130831--130886 Score: 112
Period size: 27 Copynumber: 2.1 Consensus size: 27
130821 AGCAGTTGGA
130831 GATGCATCCTTTGTACAACTTTTGTCT
1 GATGCATCCTTTGTACAACTTTTGTCT
130858 GATGCATCCTTTGTACAACTTTTGTCT
1 GATGCATCCTTTGTACAACTTTTGTCT
130885 GA
1 GA
130887 ATATGCTATC
Statistics
Matches: 29, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
27 29 1.00
ACGTcount: A:0.20, C:0.21, G:0.16, T:0.43
Consensus pattern (27 bp):
GATGCATCCTTTGTACAACTTTTGTCT
Found at i:131666 original size:51 final size:51
Alignment explanation
Indices: 131605--131708 Score: 181
Period size: 51 Copynumber: 2.0 Consensus size: 51
131595 TTTCACTGCT
* *
131605 GAGTCCTTCTGCACAGAGTCATCCGCCTTTAATTTTTTAGCAGGGGATGAA
1 GAGTCATTCTGCAAAGAGTCATCCGCCTTTAATTTTTTAGCAGGGGATGAA
*
131656 GAGTCATTCTGCAAAGAGTCATCCTCCTTTAATTTTTTAGCAGGGGATGAA
1 GAGTCATTCTGCAAAGAGTCATCCGCCTTTAATTTTTTAGCAGGGGATGAA
131707 GA
1 GA
131709 AATTAACTTG
Statistics
Matches: 50, Mismatches: 3, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
51 50 1.00
ACGTcount: A:0.26, C:0.19, G:0.23, T:0.32
Consensus pattern (51 bp):
GAGTCATTCTGCAAAGAGTCATCCGCCTTTAATTTTTTAGCAGGGGATGAA
Found at i:134604 original size:15 final size:15
Alignment explanation
Indices: 134584--134614 Score: 62
Period size: 15 Copynumber: 2.1 Consensus size: 15
134574 AATATATAGC
134584 TGAGTTACAAAATAA
1 TGAGTTACAAAATAA
134599 TGAGTTACAAAATAA
1 TGAGTTACAAAATAA
134614 T
1 T
134615 ATGTACGATT
Statistics
Matches: 16, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
15 16 1.00
ACGTcount: A:0.52, C:0.06, G:0.13, T:0.29
Consensus pattern (15 bp):
TGAGTTACAAAATAA
Found at i:144240 original size:22 final size:22
Alignment explanation
Indices: 144215--144259 Score: 90
Period size: 22 Copynumber: 2.0 Consensus size: 22
144205 AATTGGAGGA
144215 TTCGTTGCAATAACAAGAAAGT
1 TTCGTTGCAATAACAAGAAAGT
144237 TTCGTTGCAATAACAAGAAAGT
1 TTCGTTGCAATAACAAGAAAGT
144259 T
1 T
144260 GGTATAATAC
Statistics
Matches: 23, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
22 23 1.00
ACGTcount: A:0.40, C:0.13, G:0.18, T:0.29
Consensus pattern (22 bp):
TTCGTTGCAATAACAAGAAAGT
Found at i:161809 original size:1 final size:1
Alignment explanation
Indices: 161805--161831 Score: 54
Period size: 1 Copynumber: 27.0 Consensus size: 1
161795 ATAATTTTTT
161805 AAAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAAA
161832 GAAGACAAAC
Statistics
Matches: 26, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 26 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Done.