Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019428.1 Corchorus olitorius cultivar O-4 contig19461, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  100849

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
11149--11187
14
2.9
13
80
3
51
53
2
2
41
1.28
11173--11424
121
2.0
126
88
8
381
50
1
10
37
1.49
15810--15845
1
36.0
1
100
0
72
0
0
0
100
0.00
22648--22677
15
2.0
15
100
0
60
40
6
33
20
1.78
25630--25684
17
3.2
17
84
0
65
36
16
21
25
1.94
31419--31481
21
3.0
21
85
0
81
22
33
14
30
1.93
49557--49596
2
20.0
2
94
0
71
50
2
0
47
1.14
54375--54416
15
2.8
15
82
10
50
54
2
38
4
1.34
57671--57805
48
2.8
48
80
8
143
47
17
14
21
1.82
57695--57826
48
2.7
49
80
6
144
48
15
13
21
1.80
62821--62857
7
5.3
7
96
0
65
59
29
10
0
1.31
70152--70278
62
2.0
63
92
1
211
54
11
15
18
1.70
75436--75494
21
2.9
21
85
5
77
35
10
20
33
1.86
80255--80318
31
2.1
32
82
11
80
45
9
23
21
1.81
80590--80627
18
2.1
18
100
0
76
39
0
21
39
1.53
81593--81624
14
2.3
14
100
0
64
34
12
25
28
1.92
85621--85663
7
6.1
7
88
0
59
88
2
9
0
0.60
94795--94880
42
2.0
42
100
0
172
22
18
16
43
1.88

Tables:   1

The End!