Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019431.1 Corchorus olitorius cultivar O-4 contig19464, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 30412
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:3892 original size:629 final size:632
Alignment explanation
Indices: 2692--3949 Score: 2416
Period size: 629 Copynumber: 2.0 Consensus size: 632
2682 AATAAACTAG
2692 ACCCAACATCAAACCCAAGTAAATAAATAAAAGCCCAAATGAAGAAAGCTGAAATAATAAAGTCT
1 ACCCAACATCAAACCCAAGTAAATAAATAAAAGCCCAAATGAAGAAAGCTGAAATAATAAAGTCT
*
2757 GAAGGAAATACAAGAATTAAAACCCAATTGAAAAGAGAAGCCCGAGTTCAGTTTTGTACCATATC
66 GAAGGAAATACAAGAATTAAAACCCAATTGAAAAGAGAAGCCCAAGTTCAGTTTTGTACCATATC
2822 AGAATGGGCCTAAACGGGTCGAGTCTGATCCACATGCTAATTCGGGTCAAGTTAAGGGTTTAACC
131 AGAATGGGCCTAAACGGGTCGAGTCTGATCCACATGCTAATTCGGGTCAAGTTAAGGGTTTAACC
*
2887 TAAAGCCTCCTCCTTTTGCCTTCTCCTTCCTCTTCTTCTTCTTCTTCTCTAACCCGACATCTCTC
196 TAAAGCCTCATCCTTTTGCCTTCTCCTTCCTCTTCTTCTTCTTCTTCTCTAACCCGACATCTCTC
2952 TTCACCGAACCACCTTGCAGCGCCACCACTAGCTTCCGCGCCGCTCCTCTTAAATCGATCATCCC
261 TTCACCGAACCACCTTGCAGCGCCACCACTAGCTTCCGCGCCGCTCCTCTTAAATCGATCATCCC
3017 ATGGTCACGACTGCCCTCTTGAGCTTACCACCATCGAGTCCTCCTGCTCCGATGACTTCTCACCC
326 ATGGTCACGACTGCCCTCTTGAGCTTACCACCATCGAGTCCTCCTGCTCCGATGACTTCTCACCC
*
3082 TTATCCAAACCGAAACTCCTCTTTACTACATAACCTCAACGGCGCTGCAACCTTCCACCGCCAAC
391 TTATCCAAACCGAAACTCCTCTTTACTACATAACCTCAACGGCGCTGCAACCTTCCACCACCAAC
3147 GATGGCTTTGTCGGGTTTCCAAAATCTCAAAAAGGCCTTCCTTTGTCTCTGAATCTCAAACTCGA
456 GATGGCTTTGTCGGGTTTCCAAAATCTCAAAAAGGCCTTCCTTTGTCTCTGAATCTCAAACTCGA
* *
3212 ACCCCACTTCCACACTCTTCCTAAGCCCATTCTAAAGAAACTCCAAGGCCTTTGAAACCTAGCCT
521 AACCCACTTCCACACTCTTCCTAAGCCCATTCTAAAGAAACTCCAAGGCCTTCGAAACCTAGCCT
3277 AAATCTAACATAACCCGCGATATAAAGCTCCAAATCCCGGCGGCAGA
586 AAATCTAACATAACCCGCGATATAAAGCTCCAAATCCCGGCGGCAGA
3324 ACCCAACATCAAACCCAAGTAAATAAATAAAAGCCCAAATGAAGAAAGCTGAAATTAA-AAAGTC
1 ACCCAACATCAAACCCAAGTAAATAAATAAAAGCCCAAATGAAGAAAGCTGAAA-TAATAAAGTC
3388 TGAAGGAAATACAAGAATTAAAACCCAATTGAAAAGAGAAGCCCAAGTTCAGTTTTGTACCATAT
65 TGAAGGAAATACAAGAATTAAAACCCAATTGAAAAGAGAAGCCCAAGTTCAGTTTTGTACCATAT
*
3453 CAGAATGGGCCTAAACGGGTCGAGTCTGATCCACATGCTAATTCGGGTCAAGTTTAGGGTTTAAC
130 CAGAATGGGCCTAAACGGGTCGAGTCTGATCCACATGCTAATTCGGGTCAAGTTAAGGGTTTAAC
3518 CTAAAGCCTCATCCTTTTGCCTTCTCCTT-C-C-TCTTCTTCTTCTTCTCTAACCCGACATCTCT
195 CTAAAGCCTCATCCTTTTGCCTTCTCCTTCCTCTTCTTCTTCTTCTTCTCTAACCCGACATCTCT
3580 CTTCACCGAACCACCTTGCAGCGCCACCACTAGCTTCCGCGCCGCTCCTCTTAAATCGATCATCC
260 CTTCACCGAACCACCTTGCAGCGCCACCACTAGCTTCCGCGCCGCTCCTCTTAAATCGATCATCC
3645 CATGGTCACGACTGCCCTCTTGAGCTTACCACCATCGAGTCCTCCTGCTCCGATGACTTCTCACC
325 CATGGTCACGACTGCCCTCTTGAGCTTACCACCATCGAGTCCTCCTGCTCCGATGACTTCTCACC
*
3710 CTTATCCAAACCGAAACTCCTCTTTACTACATAATCTCAACGGCGCTGCAACCTTCCACCACCAA
390 CTTATCCAAACCGAAACTCCTCTTTACTACATAACCTCAACGGCGCTGCAACCTTCCACCACCAA
3775 CGATGGCTTTGTCGGGTTTCCAAAATCTCAAAAAGGCCTTCCTTTGTCTCTGAATCTCAAACTCG
455 CGATGGCTTTGTCGGGTTTCCAAAATCTCAAAAAGGCCTTCCTTTGTCTCTGAATCTCAAACTCG
3840 AAACCCACTTCCACACTCTTCCTAAGCCCATTCTAAAGAAACTCCAAGGCCTTCGAAACCTAGCC
520 AAACCCACTTCCACACTCTTCCTAAGCCCATTCTAAAGAAACTCCAAGGCCTTCGAAACCTAGCC
3905 TAAATCTAACATAACCCGCGATATAAAGCTCCAAATCCCGGCGGC
585 TAAATCTAACATAACCCGCGATATAAAGCTCCAAATCCCGGCGGC
3950 TAGTGCGACT
Statistics
Matches: 618, Mismatches: 7, Indels: 5
0.98 0.01 0.01
Matches are distributed among these distances:
629 397 0.64
630 1 0.00
631 1 0.00
632 216 0.35
633 3 0.00
ACGTcount: A:0.29, C:0.32, G:0.14, T:0.25
Consensus pattern (632 bp):
ACCCAACATCAAACCCAAGTAAATAAATAAAAGCCCAAATGAAGAAAGCTGAAATAATAAAGTCT
GAAGGAAATACAAGAATTAAAACCCAATTGAAAAGAGAAGCCCAAGTTCAGTTTTGTACCATATC
AGAATGGGCCTAAACGGGTCGAGTCTGATCCACATGCTAATTCGGGTCAAGTTAAGGGTTTAACC
TAAAGCCTCATCCTTTTGCCTTCTCCTTCCTCTTCTTCTTCTTCTTCTCTAACCCGACATCTCTC
TTCACCGAACCACCTTGCAGCGCCACCACTAGCTTCCGCGCCGCTCCTCTTAAATCGATCATCCC
ATGGTCACGACTGCCCTCTTGAGCTTACCACCATCGAGTCCTCCTGCTCCGATGACTTCTCACCC
TTATCCAAACCGAAACTCCTCTTTACTACATAACCTCAACGGCGCTGCAACCTTCCACCACCAAC
GATGGCTTTGTCGGGTTTCCAAAATCTCAAAAAGGCCTTCCTTTGTCTCTGAATCTCAAACTCGA
AACCCACTTCCACACTCTTCCTAAGCCCATTCTAAAGAAACTCCAAGGCCTTCGAAACCTAGCCT
AAATCTAACATAACCCGCGATATAAAGCTCCAAATCCCGGCGGCAGA
Found at i:7185 original size:2 final size:2
Alignment explanation
Indices: 7178--7224 Score: 80
Period size: 2 Copynumber: 24.5 Consensus size: 2
7168 TAGAAACGGA
7178 AT AT AT AT A- AT AT AT AT AT AT AT A- AT AT AT AT AT AT AT AT
1 AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
7218 AT AT AT A
1 AT AT AT A
7225 AACTAACATA
Statistics
Matches: 43, Mismatches: 0, Indels: 4
0.91 0.00 0.09
Matches are distributed among these distances:
1 2 0.05
2 41 0.95
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (2 bp):
AT
Found at i:7196 original size:15 final size:15
Alignment explanation
Indices: 7178--7224 Score: 87
Period size: 15 Copynumber: 3.2 Consensus size: 15
7168 TAGAAACGGA
7178 ATATATATAATATAT
1 ATATATATAATATAT
7193 ATATATATAATATAT
1 ATATATATAATATAT
7208 ATATATAT-ATATAT
1 ATATATATAATATAT
7222 ATA
1 ATA
7225 AACTAACATA
Statistics
Matches: 32, Mismatches: 0, Indels: 1
0.97 0.00 0.03
Matches are distributed among these distances:
14 9 0.28
15 23 0.72
ACGTcount: A:0.53, C:0.00, G:0.00, T:0.47
Consensus pattern (15 bp):
ATATATATAATATAT
Found at i:7252 original size:15 final size:16
Alignment explanation
Indices: 7220--7253 Score: 52
Period size: 16 Copynumber: 2.2 Consensus size: 16
7210 ATATATATAT
7220 ATATAAACTAACATAA
1 ATATAAACTAACATAA
*
7236 ATATGAACTAA-ATAA
1 ATATAAACTAACATAA
7251 ATA
1 ATA
7254 CTTACGAAAG
Statistics
Matches: 17, Mismatches: 1, Indels: 1
0.89 0.05 0.05
Matches are distributed among these distances:
15 7 0.41
16 10 0.59
ACGTcount: A:0.62, C:0.09, G:0.03, T:0.26
Consensus pattern (16 bp):
ATATAAACTAACATAA
Found at i:8134 original size:64 final size:63
Alignment explanation
Indices: 8016--8160 Score: 236
Period size: 64 Copynumber: 2.3 Consensus size: 63
8006 TTCATTTCAT
* *
8016 TTTTTTTTTTTGGGTTTCTGGAAAGTGGGAAAAAGAAAATTTTTTTTTTCAAGGTGGAAGCAG
1 TTTTTTTTGTTGGGTTTTTGGAAAGTGGGAAAAAGAAAATTTTTTTTTTCAAGGTGGAAGCAG
* * *
8079 TTTTTTTTGTTGGGTTTTTGGAAAGTGGGAAAAAGCAAATCTTTTTTTTTTAAGGTGGAAGCAT
1 TTTTTTTTGTTGGGTTTTTGGAAAGTGGGAAAAAGAAAAT-TTTTTTTTTCAAGGTGGAAGCAG
8143 TTTTTTTTGTTGGGTTTT
1 TTTTTTTTGTTGGGTTTT
8161 CCAAATGCAA
Statistics
Matches: 76, Mismatches: 5, Indels: 1
0.93 0.06 0.01
Matches are distributed among these distances:
63 37 0.49
64 39 0.51
ACGTcount: A:0.23, C:0.04, G:0.25, T:0.48
Consensus pattern (63 bp):
TTTTTTTTGTTGGGTTTTTGGAAAGTGGGAAAAAGAAAATTTTTTTTTTCAAGGTGGAAGCAG
Found at i:9455 original size:43 final size:42
Alignment explanation
Indices: 9407--9501 Score: 120
Period size: 43 Copynumber: 2.2 Consensus size: 42
9397 GCAGACCTCT
* *
9407 GAAAATTGACAAGAAGACAATTC-GGAAACCAACATAGATCTCC
1 GAAAATTGACAAGAAGACAAGTCAAG-AACCAACATAGAT-TCC
* *
9450 GAAAATTAACAAGAAGACAAGTCAAGAATCAACATAGATTCC
1 GAAAATTGACAAGAAGACAAGTCAAGAACCAACATAGATTCC
*
9492 TAAAATTGAC
1 GAAAATTGAC
9502 TGAAAGGCCA
Statistics
Matches: 45, Mismatches: 6, Indels: 3
0.83 0.11 0.06
Matches are distributed among these distances:
42 11 0.24
43 33 0.73
44 1 0.02
ACGTcount: A:0.49, C:0.18, G:0.15, T:0.18
Consensus pattern (42 bp):
GAAAATTGACAAGAAGACAAGTCAAGAACCAACATAGATTCC
Found at i:10128 original size:128 final size:127
Alignment explanation
Indices: 9852--10335 Score: 754
Period size: 128 Copynumber: 3.8 Consensus size: 127
9842 AGTGACTCAT
* ** * * * *
9852 ATGGAAACGAACTTTGGCTTATAAAAAAGCCTCAGATGTTTGGATGGAACCGAAGCTTAAACTAA
1 ATGGAAGCGAAC-TTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAA
*
9917 CTCGTATGGAAACGAGTTTGCTCCTGAAGACTGAACTATCTTCAAATCAAATTGTATACTCGC
65 CTCGTATGGAAACGAGTTTGCTCTTGAAGACTGAACTATCTTCAAATCAAATTGTATACTCGC
* *
9980 ATGGAAGGGAACTTGACTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
1 ATGGAAGCGAACTTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
* * *
10045 TCGTATGGAAACGATTTTGGTCTTGAAGGACTGAACTATCCTCAAATCAAATTGTATACTCGC
66 TCGTATGGAAACGAGTTTGCTCTTGAA-GACTGAACTATCTTCAAATCAAATTGTATACTCGC
10108 ATGGAAGCGAACTTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
1 ATGGAAGCGAACTTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
10173 TCGTATGGAAACGAGTTTGCTCTTGAAAGACTGAACTATCTTCAAATCAAATTGTATACTCGC
66 TCGTATGGAAACGAGTTTGCTCTTG-AAGACTGAACTATCTTCAAATCAAATTGTATACTCGC
* * * *
10236 ATGGAAGCGAACTTGCCTTATGGAAAAGCCCCAAGTGCTTGGATGGAACCAAAGTTTAAACTGAC
1 ATGGAAGCGAACTTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
*
10301 TCGTATGGAAACGAGCTTAG-TCTTGGAAGACTGAA
66 TCGTATGGAAACGAG-TTTGCTCTT-GAAGACTGAA
10336 TTCATGTGGA
Statistics
Matches: 329, Mismatches: 23, Indels: 8
0.91 0.06 0.02
Matches are distributed among these distances:
127 70 0.21
128 253 0.77
129 6 0.02
ACGTcount: A:0.34, C:0.19, G:0.21, T:0.26
Consensus pattern (127 bp):
ATGGAAGCGAACTTGGCTTATGGAAAAGCCCCAAATGCTTGGATGGAACCAAAGCTTAAACTAAC
TCGTATGGAAACGAGTTTGCTCTTGAAGACTGAACTATCTTCAAATCAAATTGTATACTCGC
Found at i:10460 original size:70 final size:69
Alignment explanation
Indices: 10350--10553 Score: 295
Period size: 70 Copynumber: 2.9 Consensus size: 69
10340 TGTGGAAAAC
* * * *
10350 TTGGCTTATGGAAAAGGCCCCTGATGCTTGGGTGGAACCAAGGTTTAAACTGACTCGTATGGAAA
1 TTGGCTTATGGAAAA-GCCCATGTTGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAA
10415 CAAGAT
65 CAA-AT
*
10421 TTGGCTTATGGAAAAGCCCATGTTGCTTGGATGGAACCAAGGCTTAAACTAACTCGTATGGAAAT
1 TTGGCTTATGGAAAAGCCCATGTTGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAA-
* *
10486 GAACT
65 CAAAT
*
10491 TTGCCTTATGG-AAA-CCCATGTTGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAAC
1 TTGGCTTATGGAAAAGCCCATGTTGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAAC
10554 GAGCTGAATT
Statistics
Matches: 122, Mismatches: 10, Indels: 6
0.88 0.07 0.04
Matches are distributed among these distances:
68 47 0.39
69 3 0.02
70 55 0.45
71 17 0.14
ACGTcount: A:0.30, C:0.18, G:0.25, T:0.26
Consensus pattern (69 bp):
TTGGCTTATGGAAAAGCCCATGTTGCTTGGATGGAACCAAGGCTTAAACTGACTCGTATGGAAAC
AAAT
Found at i:20246 original size:48 final size:49
Alignment explanation
Indices: 20151--20252 Score: 163
Period size: 48 Copynumber: 2.1 Consensus size: 49
20141 TTATAATAAA
*
20151 AAAATCATAATTTTAAATAATTTTTTAAAATAATTGATCTATGTAGAGG
1 AAAATCATAATTTTAAATAATTTTTTAAAAAAATTGATCTATGTAGAGG
*
20200 AAAATCATAATTTTAAATAA-TTTTTAAAAAAATTGATC-ATTTTAGAGG
1 AAAATCATAATTTTAAATAATTTTTTAAAAAAATTGATCTA-TGTAGAGG
20248 AAAAT
1 AAAAT
20253 GAAGTAAAAG
Statistics
Matches: 50, Mismatches: 2, Indels: 3
0.91 0.04 0.05
Matches are distributed among these distances:
47 1 0.02
48 29 0.58
49 20 0.40
ACGTcount: A:0.48, C:0.04, G:0.09, T:0.39
Consensus pattern (49 bp):
AAAATCATAATTTTAAATAATTTTTTAAAAAAATTGATCTATGTAGAGG
Found at i:21379 original size:26 final size:25
Alignment explanation
Indices: 21328--21389 Score: 99
Period size: 26 Copynumber: 2.5 Consensus size: 25
21318 ACGAAGAAAA
*
21328 AAAGGAAG-AAGTAAAAATAACTGT
1 AAAGAAAGAAAGTAAAAATAACTGT
21352 AAAGAAAGAAAGTAAAACATAACTGT
1 AAAGAAAGAAAGTAAAA-ATAACTGT
21378 AAAGAAAGAAAG
1 AAAGAAAGAAAG
21390 AAGGGAAAAG
Statistics
Matches: 35, Mismatches: 1, Indels: 2
0.92 0.03 0.05
Matches are distributed among these distances:
24 7 0.20
25 8 0.23
26 20 0.57
ACGTcount: A:0.63, C:0.05, G:0.19, T:0.13
Consensus pattern (25 bp):
AAAGAAAGAAAGTAAAAATAACTGT
Found at i:26092 original size:62 final size:62
Alignment explanation
Indices: 26016--26140 Score: 232
Period size: 62 Copynumber: 2.0 Consensus size: 62
26006 ATCAAATGTT
* *
26016 CATTAAAAAGCTATTTGAGTTATCAAAGGTTTTTGAATGTTATCAATAAATTCAGTAATTAA
1 CATTAAAAAACTATTTAAGTTATCAAAGGTTTTTGAATGTTATCAATAAATTCAGTAATTAA
26078 CATTAAAAAACTATTTAAGTTATCAAAGGTTTTTGAATGTTATCAATAAATTCAGTAATTAA
1 CATTAAAAAACTATTTAAGTTATCAAAGGTTTTTGAATGTTATCAATAAATTCAGTAATTAA
26140 C
1 C
26141 CTTATACTGT
Statistics
Matches: 61, Mismatches: 2, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
62 61 1.00
ACGTcount: A:0.42, C:0.09, G:0.11, T:0.38
Consensus pattern (62 bp):
CATTAAAAAACTATTTAAGTTATCAAAGGTTTTTGAATGTTATCAATAAATTCAGTAATTAA
Found at i:27295 original size:58 final size:57
Alignment explanation
Indices: 27201--27314 Score: 174
Period size: 58 Copynumber: 2.0 Consensus size: 57
27191 ATTAATCGAA
*
27201 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTCGGACCAAGGCT
1 TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTAGGACCAAGGCT
* * * *
27258 TATCGAGTGACATGTTTTTTTATTAGATGCCTAAAAAAGACGTTTTAGGACCGAGGC
1 TATCAAGTGACATG-TTCTTTATTAGATGCATAAAAAAGACGTTTTAGGACCAAGGC
27315 ATGATGCTAT
Statistics
Matches: 51, Mismatches: 5, Indels: 1
0.89 0.09 0.02
Matches are distributed among these distances:
57 13 0.25
58 38 0.75
ACGTcount: A:0.32, C:0.15, G:0.21, T:0.32
Consensus pattern (57 bp):
TATCAAGTGACATGTTCTTTATTAGATGCATAAAAAAGACGTTTTAGGACCAAGGCT
Found at i:28286 original size:36 final size:36
Alignment explanation
Indices: 28239--28308 Score: 106
Period size: 36 Copynumber: 1.9 Consensus size: 36
28229 TTCAATAACC
*
28239 TTACATCTTTTG-AGATATTGGTTATCATATTTCTTA
1 TTACATCTTTTGTA-ATATTGATTATCATATTTCTTA
*
28275 TTACATTTTTTGTAATATTGATTATCATATTTCT
1 TTACATCTTTTGTAATATTGATTATCATATTTCT
28309 CCAAAATCTC
Statistics
Matches: 31, Mismatches: 2, Indels: 2
0.89 0.06 0.06
Matches are distributed among these distances:
36 30 0.97
37 1 0.03
ACGTcount: A:0.26, C:0.10, G:0.09, T:0.56
Consensus pattern (36 bp):
TTACATCTTTTGTAATATTGATTATCATATTTCTTA
Found at i:29173 original size:203 final size:204
Alignment explanation
Indices: 28822--29233 Score: 738
Period size: 203 Copynumber: 2.0 Consensus size: 204
28812 GCTTAATAAC
28822 TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATCACTAACAAAATTGTAGTGAATAA
1 TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATCACTAACAAAATTGTAGTGAATAA
* *
28887 GATACAACACATTATTATTATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGG
66 GATACAACACATTACTATCATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGG
28952 TTGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAG
131 TTGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAA-
*
29017 ATCCGATTTA
195 AACCGATTTA
* *
29027 TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATTACTAACAAAGTT-TAGTGAATAA
1 TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATCACTAACAAAATTGTAGTGAATAA
* *
29091 GATACAACACATTACTATCA-TATATATAGAACTATACCAAAAAAAATTAGTTGAACATTAGTGG
66 GATACAACACATTACTATCATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGG
29155 TTGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAA
131 TTGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAA
29220 ACCGATTTA
196 ACCGATTTA
29229 TTTAT
1 TTTAT
29234 TATTAAGGAA
Statistics
Matches: 200, Mismatches: 7, Indels: 3
0.95 0.03 0.01
Matches are distributed among these distances:
202 14 0.07
203 106 0.53
204 28 0.14
205 52 0.26
ACGTcount: A:0.45, C:0.09, G:0.10, T:0.36
Consensus pattern (204 bp):
TTTATCAATGGTGAATGTTATTAATTTTTTAAGTCTAAGATCACTAACAAAATTGTAGTGAATAA
GATACAACACATTACTATCATTATATATAAAACTATACCAAAAAAAAGTAGTTGAACATTAGTGG
TTGATTTATTAAATTAAATTAGATCAATGTCAAACAAAATTTCAAAATTATAAAAGATATTAAAA
ACCGATTTA
Done.