Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019434.1 Corchorus olitorius cultivar O-4 contig19467, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 4298
ACGTcount: A:0.28, C:0.22, G:0.17, T:0.33


Found at i:1491 original size:15 final size:16

Alignment explanation


    Indices: 1461--1494  Score: 52
    Period size: 15  Copynumber: 2.2  Consensus size: 16

       1451 TTACTTTGCT

                 *          
       1461 TTGTTTTCTAGTTTAA
          1 TTGTTCTCTAGTTTAA

                            
       1477 TTGTTCTCT-GTTTAA
          1 TTGTTCTCTAGTTTAA

               
       1492 TTG
          1 TTG

       1495 CTTTCTTTCA


Statistics
Matches: 17,  Mismatches: 1, Indels: 1
        0.89            0.05        0.05

Matches are distributed among these distances:
  15    9  0.53
  16    8  0.47

ACGTcount: A:0.15, C:0.09, G:0.15, T:0.62


Consensus pattern (16 bp):   
TTGTTCTCTAGTTTAA

Found at i:4280 original size:13 final size:13

Alignment explanation


    Indices: 4262--4286  Score: 50
    Period size: 13  Copynumber: 1.9  Consensus size: 13

       4252 ATTAAAATAG

                         
       4262 TAAAAAAAATAAT
          1 TAAAAAAAATAAT

                        
       4275 TAAAAAAAATAA
          1 TAAAAAAAATAA

       4287 CGTCCTGCGT


Statistics
Matches: 12,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  13   12  1.00

ACGTcount: A:0.80, C:0.00, G:0.00, T:0.20


Consensus pattern (13 bp):   
TAAAAAAAATAAT
Done.