Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019435.1 Corchorus olitorius cultivar O-4 contig19468, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  58012

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
804--842
19
2.0
20
90
5
62
43
5
25
25
1.75
1322--1368
21
2.2
21
96
0
85
31
29
4
34
1.77
4540--4633
45
2.2
44
90
7
149
38
21
5
35
1.76
5522--5691
78
2.2
79
93
3
290
34
12
1
52
1.47
5522--5718
78
2.5
77
87
6
227
36
11
2
50
1.49
9562--9620
31
1.9
31
85
0
82
27
16
6
49
1.71
10223--10320
50
2.0
50
87
0
142
17
15
14
53
1.74
10476--10520
23
2.0
23
90
0
72
26
22
15
35
1.94
12326--12369
22
2.0
22
86
4
61
9
31
15
43
1.79
16700--16727
2
14.0
2
100
0
56
50
0
0
50
1.00
20065--20092
13
2.2
13
100
0
56
42
7
7
42
1.59
24027--24065
19
2.0
20
85
5
53
43
12
7
35
1.72
32616--32689
32
2.3
32
100
0
148
21
31
22
24
1.99
32871--32924
15
3.6
14
83
14
63
48
18
9
24
1.77
32882--32924
16
2.8
16
92
3
70
48
16
9
25
1.75
41709--41741
12
2.7
12
95
4
57
18
9
0
72
1.10
49245--49302
19
2.9
19
82
5
71
37
12
20
29
1.89
50525--50650
29
4.4
29
87
5
175
19
19
24
36
1.95
50528--50650
57
2.1
58
85
8
171
18
20
23
37
1.94

Tables:   1

The End!