Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019436.1 Corchorus olitorius cultivar O-4 contig19469, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 5427
ACGTcount: A:0.30, C:0.19, G:0.19, T:0.32


Found at i:5408 original size:26 final size:27

Alignment explanation


    Indices: 5363--5425  Score: 76
    Period size: 26  Copynumber: 2.3  Consensus size: 27

       5353 AGAACAAGAA

                           *             
       5363 TTTTTTTTTATTTATGACGCAGAAAA-AC
          1 TTTTTTTTTA-TTATAACGCA-AAAACAC

                                     * 
       5391 TTTTTTTTTA-TATAACGCAAAAACTC
          1 TTTTTTTTTATTATAACGCAAAAACAC

                     
       5417 TTTTTTTTT
          1 TTTTTTTTT

       5426 TT


Statistics
Matches: 32,  Mismatches: 2, Indels: 4
        0.84            0.05        0.11

Matches are distributed among these distances:
  25    4  0.12
  26   18  0.56
  28   10  0.31

ACGTcount: A:0.29, C:0.11, G:0.06, T:0.54


Consensus pattern (27 bp):   
TTTTTTTTTATTATAACGCAAAAACAC
Done.