Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019437.1 Corchorus olitorius cultivar O-4 contig19470, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3014
ACGTcount: A:0.36, C:0.18, G:0.17, T:0.28


Found at i:424 original size:15 final size:16

Alignment explanation


    Indices: 400--439  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        390 AGAGGTTGAA

                 *          
        400 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                            
        415 AGAAAACAATTAAACT
          1 AGAAAACAATTAAACT

                     
        431 AGAAAACAA
          1 AGAAAACAA

        440 AGCAAAGTAA


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.65, C:0.12, G:0.10, T:0.12


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Done.