Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001944.1 Corchorus olitorius cultivar O-4 contig01944, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 691

Length: 1153
ACGTcount: A:0.31, C:0.16, G:0.29, T:0.24


Found at i:861 original size:11 final size:11

Alignment explanation


    Indices: 845--874  Score: 51
    Period size: 11  Copynumber: 2.7  Consensus size: 11

        835 AAGGAAAATA

                       
        845 TGAAGAACGAG
          1 TGAAGAACGAG

                       
        856 TGAAGAACGAG
          1 TGAAGAACGAG

               *    
        867 TGATGAAC
          1 TGAAGAAC

        875 AGGGTGAAAA


Statistics
Matches: 18,  Mismatches: 1, Indels: 0
        0.95            0.05        0.00

Matches are distributed among these distances:
  11   18  1.00

ACGTcount: A:0.43, C:0.10, G:0.33, T:0.13


Consensus pattern (11 bp):   
TGAAGAACGAG
Done.