Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019440.1 Corchorus olitorius cultivar O-4 contig19473, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  66145

Tables:   1   

This is table  1  of  1  ( 29 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1969--1995
4
6.8
4
100
0
54
22
0
0
77
0.76
4292--4319
2
14.0
2
100
0
56
50
0
0
50
1.00
14462--14563
3
34.0
3
75
3
53
0
45
2
50
1.23
14458--14553
21
4.6
21
78
3
86
1
45
3
50
1.24
14462--14550
27
3.3
27
80
0
106
1
46
3
49
1.26
17468--17496
2
14.5
2
100
0
58
48
0
0
51
1.00
19586--19629
6
7.3
6
89
0
52
20
59
2
18
1.49
19586--19629
12
3.7
12
87
0
61
20
59
2
18
1.49
19614--19653
21
1.9
21
84
0
53
20
45
7
27
1.78
20066--20115
25
2.0
25
100
0
100
32
16
28
24
1.96
28440--28515
37
2.1
37
97
0
143
25
25
11
38
1.89
28999--29059
32
1.9
32
96
0
113
26
21
6
45
1.76
29092--29270
98
1.8
97
92
1
304
34
11
1
53
1.44
30457--30518
31
2.0
31
93
0
106
29
22
6
41
1.78
30517--30693
93
1.9
93
91
0
291
33
13
1
51
1.51
43909--44409
132
3.8
132
85
0
588
31
15
14
38
1.87
44315--44515
100
2.0
100
83
3
253
32
16
15
34
1.91
46614--46781
31
5.5
31
68
18
129
32
20
20
26
1.97
46618--46776
60
2.7
60
96
0
291
33
20
20
26
1.97
46851--46952
29
3.5
28
72
15
89
29
18
17
34
1.94
46818--46983
60
2.8
59
86
7
235
27
18
18
35
1.95
47698--47756
20
3.0
20
97
2
111
61
3
0
35
1.13
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
53351--53397
4
11.8
4
95
0
85
0
23
2
74
0.93
58014--58244
115
2.0
115
100
0
462
31
14
12
41
1.84
59082--59630
281
2.0
280
93
2
940
32
16
20
30
1.95
60258--60307
25
2.0
25
96
0
91
22
4
30
44
1.71
64176--64215
18
2.2
18
90
0
62
77
7
2
12
1.07
65727--65767
2
20.5
2
92
0
64
43
2
0
53
1.13
65875--65956
40
2.0
40
100
0
164
41
2
20
35
1.66

Tables:   1

The End!