Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019441.1 Corchorus olitorius cultivar O-4 contig19474, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75015

Tables:   1   

This is table  1  of  1  ( 27 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
379--420
16
2.7
16
88
3
59
54
0
40
4
1.21
947--1111
80
2.0
81
91
1
269
40
6
25
27
1.81
1304--1346
15
2.8
16
82
7
61
4
41
0
53
1.21
1306--1355
15
3.3
15
77
2
55
6
40
0
54
1.25
6503--6595
42
2.2
42
94
1
159
35
32
12
19
1.90
10297--10334
16
2.3
17
86
4
51
10
7
0
81
0.87
11474--11522
21
2.3
21
82
6
55
40
16
28
14
1.87
21828--21974
72
2.0
73
85
7
203
38
6
13
40
1.71
23288--23392
31
3.5
31
70
15
92
37
15
18
29
1.91
23291--23450
60
2.7
60
86
1
214
35
15
20
28
1.93
25259--25351
47
2.0
47
95
0
168
39
12
15
32
1.85
29298--29346
22
2.3
20
76
10
53
36
0
51
12
1.40
32957--32997
21
1.9
22
85
5
57
43
29
17
9
1.80
35335--35380
3
15.7
3
86
4
67
34
0
2
63
1.07
38874--38924
22
2.2
24
83
16
72
41
0
0
58
0.98
38874--38922
25
2.0
25
84
8
64
40
0
0
59
0.98
43167--43231
32
2.0
32
93
0
112
55
7
7
29
1.56
46706--46911
104
2.0
104
90
1
324
47
9
28
14
1.75
48450--48517
3
22.7
3
100
0
136
67
0
0
32
0.91
48512--48552
4
10.2
4
83
0
55
56
0
0
43
0.99
48512--48547
12
3.0
12
91
0
63
55
0
0
44
0.99
48450--48549
24
4.2
24
88
10
127
64
0
0
36
0.94
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
48512--48552
8
5.1
8
93
0
64
56
0
0
43
0.99
48779--48839
29
2.0
31
81
6
72
34
14
18
32
1.91
49034--49088
25
2.1
27
90
6
87
50
1
0
47
1.11
70985--71009
4
6.2
4
100
0
50
24
0
0
76
0.80
73678--73724
20
2.3
21
81
7
60
44
17
23
14
1.85

Tables:   1

The End!