Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019442.1 Corchorus olitorius cultivar O-4 contig19475, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23441

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3201--3247
20
2.3
21
81
7
60
44
17
23
14
1.85
4560--4630
29
2.4
29
78
4
79
42
14
25
18
1.87
6769--6848
29
2.7
30
84
5
108
28
16
11
43
1.82
8093--8141
15
3.1
15
77
16
55
75
0
18
6
1.00
10591--10645
6
9.2
6
85
0
56
0
43
18
38
1.50
10591--10645
18
3.1
18
75
0
65
0
43
18
38
1.50
11111--11169
26
2.2
27
87
6
84
47
11
16
23
1.80
11307--11447
31
4.6
31
79
6
153
31
17
12
38
1.88
11307--11447
60
2.3
62
82
4
162
31
17
12
38
1.88
12428--12565
60
2.3
62
79
2
145
39
11
15
33
1.83
12484--12564
31
2.6
31
90
0
126
39
11
14
34
1.82
12590--12626
11
3.4
11
88
0
56
16
32
29
21
1.95
12694--12760
31
2.2
31
92
5
111
20
19
11
47
1.81
13964--13999
17
2.1
17
89
0
54
38
19
22
19
1.93
22038--22063
13
2.0
13
100
0
52
15
0
30
53
1.42

Tables:   1

The End!