Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019445.1 Corchorus olitorius cultivar O-4 contig19478, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 1913
ACGTcount: A:0.31, C:0.17, G:0.16, T:0.36


Found at i:233 original size:13 final size:12

Alignment explanation


    Indices: 215--258  Score: 52
    Period size: 14  Copynumber: 3.4  Consensus size: 12

        205 TTTTATTACC

                         
        215 GTTTTATTAAATT
          1 GTTTTA-TAAATT

                       *
        228 GTTTTATAAATG
          1 GTTTTATAAATT

                          
        240 GTTTTAAATAAATT
          1 GTTTT--ATAAATT

                 
        254 GTTTT
          1 GTTTT

        259 GGGTGCATGA


Statistics
Matches: 27,  Mismatches: 2, Indels: 3
        0.84            0.06        0.09

Matches are distributed among these distances:
  12   10  0.37
  13    6  0.22
  14   11  0.41

ACGTcount: A:0.32, C:0.00, G:0.11, T:0.57


Consensus pattern (12 bp):   
GTTTTATAAATT
Done.