Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019447.1 Corchorus olitorius cultivar O-4 contig19480, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  18784

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
127--170
2
22.0
2
100
0
88
50
0
0
50
1.00
1326--1387
27
2.3
26
81
15
65
45
3
4
46
1.40
2174--2203
15
2.0
15
93
0
51
20
23
13
43
1.86
2747--2801
22
2.4
23
90
3
85
34
12
7
45
1.70
2755--2801
23
2.1
22
92
4
76
38
14
4
42
1.66
2985--3037
20
2.5
21
78
9
54
35
13
15
35
1.86
3049--3111
23
2.8
23
90
2
92
39
19
4
36
1.72
2848--3290
22
20.5
22
68
12
195
35
16
10
36
1.84
2848--3994
44
26.7
43
66
19
229
35
16
10
37
1.83
3399--3794
22
17.9
22
70
15
183
34
16
9
39
1.81
3374--3589
87
2.4
89
81
6
226
35
13
10
40
1.79
3812--4027
22
9.8
21
74
9
153
37
18
9
34
1.83
3798--4029
66
3.5
66
80
5
252
37
18
9
34
1.82
4192--4230
20
2.0
20
85
10
53
64
2
5
28
1.28
10114--10151
14
2.7
14
100
0
76
55
5
0
39
1.23
11270--11308
21
1.9
21
84
5
53
53
7
12
25
1.65
13364--13402
15
2.6
16
88
8
55
2
0
10
87
0.65
13364--13402
20
2.0
20
90
10
62
2
0
10
87
0.65
13374--13404
11
2.8
11
90
0
53
0
0
9
90
0.46

Tables:   1

The End!