genome.fa.s19450.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019450.1 Corchorus olitorius cultivar O-4 contig19483, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  50150

Tables:   1   

This is table  1  of  1  ( 55 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
7692--8343	54	12.2	51	84	9	485	29	21	19	28	1.98
7721--8343	107	5.8	107	82	7	685	29	22	19	28	1.98
7716--8343	161	3.9	161	81	6	702	29	22	19	28	1.98
8309--8931	35	17.8	35	90	2	905	40	19	13	26	1.88
8309--8931	104	5.9	104	90	3	930	40	19	13	26	1.88
8901--9260	53	6.7	53	79	9	279	32	20	18	28	1.96
8966--9277	107	2.9	109	78	9	302	33	19	17	29	1.95
8966--9264	54	5.6	55	78	11	264	33	20	17	28	1.95
10344--10421	39	2.0	39	89	0	120	39	12	12	34	1.82
10599--10653	26	2.1	26	83	12	69	9	20	0	70	1.13
15837--15876	19	2.1	19	95	0	71	35	25	12	27	1.92
20926--20962	2	18.5	2	100	0	74	51	0	0	48	1.00
21584--21825	64	3.8	64	84	0	295	32	11	19	36	1.88
22194--22241	2	24.0	2	86	0	69	56	0	0	43	0.99
24118--24169	27	1.9	27	88	0	77	36	23	5	34	1.79
23348--24588	450	2.8	430	75	15	1261	35	14	14	36	1.86
24619--25948	476	2.9	452	87	4	1789	35	13	15	36	1.87
23669--25948	921	2.4	918	86	6	2953	35	14	14	35	1.87
27218--27393	64	2.8	64	76	3	158	29	14	20	35	1.92
27667--27740	19	3.8	20	83	7	98	35	25	12	27	1.91
27669--27743	40	1.9	38	89	5	114	34	25	12	28	1.91
29988--30036	23	2.2	23	81	3	55	63	6	12	18	1.48
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
30247--30421	64	2.8	64	81	0	199	29	12	20	37	1.89
30224--30397	64	2.8	63	78	5	196	31	11	21	36	1.89
31474--31626	64	2.4	64	77	5	150	28	14	22	34	1.93
32479--32539	19	3.1	19	82	13	79	36	24	8	31	1.85
35061--35225	64	2.6	64	81	2	181	29	13	20	36	1.91
35461--35500	19	2.1	19	95	0	71	32	22	10	35	1.87
36088--36264	64	2.8	63	76	6	185	29	12	20	36	1.90
36581--36641	19	3.1	19	86	9	86	37	22	8	31	1.84
39967--40132	22	7.6	22	77	7	153	33	7	16	43	1.75
40021--40150	66	2.0	65	85	7	174	35	6	16	41	1.75
39964--40361	22	18.0	22	73	11	144	37	9	15	37	1.79
40126--40179	27	2.0	27	85	0	72	48	7	11	33	1.67
39963--40361	44	9.0	43	72	14	165	37	9	15	37	1.79
40034--40362	22	14.8	22	69	16	148	39	9	14	36	1.79
40015--40387	22	16.7	23	70	16	146	39	9	14	36	1.79
40460--40541	22	3.7	22	74	6	76	37	7	19	35	1.80
40459--40543	44	1.9	44	85	0	116	38	7	18	35	1.78
40508--40549	22	1.9	22	95	0	75	38	7	9	45	1.64
40723--40868	22	6.8	22	71	19	112	41	9	13	35	1.77
40850--40952	46	2.2	46	81	3	118	34	13	18	33	1.90
40985--41036	22	2.3	23	83	12	72	44	3	15	36	1.65
40985--41036	23	2.3	22	87	9	70	44	3	15	36	1.65
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
41071--41115	22	2.1	21	88	8	65	44	6	8	40	1.62
41050--41217	86	2.0	83	94	3	291	41	10	8	39	1.70
41162--41201	22	1.9	22	90	10	66	35	5	15	45	1.68
47960--47999	5	8.4	5	89	10	66	22	20	0	57	1.41
47960--47994	18	1.9	18	100	0	70	22	20	0	57	1.41
47960--48041	23	3.6	23	76	15	89	28	18	1	52	1.53
47959--48053	25	3.9	25	76	12	99	28	16	1	53	1.50
48987--49163	64	2.8	64	78	0	185	33	10	17	38	1.84
49422--49552	12	10.7	12	90	4	208	32	24	9	32	1.88
49422--49552	25	5.3	24	90	5	208	32	24	9	32	1.88
49422--49552	37	3.5	37	98	0	253	32	24	9	32	1.88

Tables:   1

The End!