Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019451.1 Corchorus olitorius cultivar O-4 contig19484, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3121
ACGTcount: A:0.30, C:0.16, G:0.20, T:0.34


Found at i:2592 original size:31 final size:31

Alignment explanation


    Indices: 2554--2615  Score: 115
    Period size: 31  Copynumber: 2.0  Consensus size: 31

       2544 AATATTTTAC

                                           
       2554 ATATTGTAAATTTAAATTTACAAACCTTGAA
          1 ATATTGTAAATTTAAATTTACAAACCTTGAA

                         *                 
       2585 ATATTGTAAATTTTAATTTACAAACCTTGAA
          1 ATATTGTAAATTTAAATTTACAAACCTTGAA

       2616 TTTCAATATA


Statistics
Matches: 30,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  31   30  1.00

ACGTcount: A:0.44, C:0.10, G:0.06, T:0.40


Consensus pattern (31 bp):   
ATATTGTAAATTTAAATTTACAAACCTTGAA

Found at i:3004 original size:19 final size:18

Alignment explanation


    Indices: 2980--3015  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

       2970 TGAAGACTTA

                               
       2980 TTGAAGACAATTTGAAGAT
          1 TTGAAGACAA-TTGAAGAT

                    *        
       2999 TTGAAGACCATTGAAGA
          1 TTGAAGACAATTGAAGA

       3016 ATTATTTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    7  0.44
  19    9  0.56

ACGTcount: A:0.42, C:0.08, G:0.22, T:0.28


Consensus pattern (18 bp):   
TTGAAGACAATTGAAGAT
Done.