Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019453.1 Corchorus olitorius cultivar O-4 contig19486, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  12709

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
431--461
16
1.9
16
93
0
53
25
9
22
41
1.84
3504--3588
43
2.0
43
97
0
161
36
8
20
35
1.82
3863--4009
31
4.7
31
85
6
154
36
24
21
17
1.95
3863--4009
62
2.4
62
84
2
179
36
24
21
17
1.95
5190--5223
2
17.0
2
100
0
68
50
0
0
50
1.00
6241--6290
24
2.1
24
96
0
91
42
10
10
38
1.72
7176--7254
39
2.0
39
97
0
149
37
8
20
32
1.83
7752--7800
18
2.9
16
81
9
53
28
4
0
67
1.09
7790--7821
2
16.0
2
100
0
64
50
0
0
50
1.00
8411--8444
5
6.8
5
86
0
50
11
0
5
82
0.83
8411--8444
10
3.4
10
95
0
59
11
0
5
82
0.83
11184--11230
2
24.0
2
86
4
69
48
0
2
48
1.13
11365--11534
64
2.7
63
79
5
171
34
11
17
37
1.86

Tables:   1

The End!