Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019456.1 Corchorus olitorius cultivar O-4 contig19489, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10267
ACGTcount: A:0.34, C:0.20, G:0.16, T:0.30


Found at i:7531 original size:23 final size:23

Alignment explanation


    Indices: 7505--7548  Score: 88
    Period size: 23  Copynumber: 1.9  Consensus size: 23

       7495 CTTATTAAAA

                                   
       7505 TTTGTGTCACCTAATCATATTTT
          1 TTTGTGTCACCTAATCATATTTT

                                 
       7528 TTTGTGTCACCTAATCATATT
          1 TTTGTGTCACCTAATCATATT

       7549 AATATATAGA


Statistics
Matches: 21,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  23   21  1.00

ACGTcount: A:0.23, C:0.18, G:0.09, T:0.50


Consensus pattern (23 bp):   
TTTGTGTCACCTAATCATATTTT
Done.