Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019464.1 Corchorus olitorius cultivar O-4 contig19497, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 6169
ACGTcount: A:0.35, C:0.17, G:0.19, T:0.30


Found at i:2358 original size:42 final size:43

Alignment explanation


    Indices: 2307--2394  Score: 133
    Period size: 45  Copynumber: 2.0  Consensus size: 43

       2297 TGCATTATCT

                                 *                     
       2307 AAATTCTA-CTCCATCTCTAGGTAATTCATCAAAATAAAGCTA
          1 AAATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAGCTA

                                     *                   
       2349 AAATTCTACTCCTCCATCTCTAGATTATTCATCAAAATAAAGCTA
          1 AAATTCTA--CCTCCATCTCTAGATAATTCATCAAAATAAAGCTA

             
       2394 A
          1 A

       2395 TATTAATTGT


Statistics
Matches: 41,  Mismatches: 2, Indels: 3
        0.89            0.04        0.07

Matches are distributed among these distances:
  42    8  0.20
  45   33  0.80

ACGTcount: A:0.40, C:0.23, G:0.06, T:0.32


Consensus pattern (43 bp):   
AAATTCTACCTCCATCTCTAGATAATTCATCAAAATAAAGCTA
Done.