Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019468.1 Corchorus olitorius cultivar O-4 contig19501, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 16947
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.31
Warning! 1 characters in sequence are not A, C, G, or T
Found at i:1866 original size:13 final size:13
Alignment explanation
Indices: 1848--1875 Score: 56
Period size: 13 Copynumber: 2.2 Consensus size: 13
1838 AACGGTCAAC
1848 GGATGATGTGGCA
1 GGATGATGTGGCA
1861 GGATGATGTGGCA
1 GGATGATGTGGCA
1874 GG
1 GG
1876 TTGACTAGTC
Statistics
Matches: 15, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 15 1.00
ACGTcount: A:0.21, C:0.07, G:0.50, T:0.21
Consensus pattern (13 bp):
GGATGATGTGGCA
Found at i:1887 original size:41 final size:43
Alignment explanation
Indices: 1842--1945 Score: 133
Period size: 41 Copynumber: 2.5 Consensus size: 43
1832 CCGGTCAACG
* *
1842 GTCAAC-GGATGATGTGGCAGGATGATGTGGCAGGTTGAC-TA
1 GTCAACAGGATGACGTGGCAGGATGACGTGGCAGGTTGACTTA
* * * *
1883 GTCAACTGG-TGACATGGCAGGATGGCGTGGCAGGTTGACTTG
1 GTCAACAGGATGACGTGGCAGGATGACGTGGCAGGTTGACTTA
1925 GTCAACAGGATGACGTGGCAG
1 GTCAACAGGATGACGTGGCAG
1946 CAGCGGATTA
Statistics
Matches: 53, Mismatches: 7, Indels: 4
0.83 0.11 0.06
Matches are distributed among these distances:
41 32 0.60
42 11 0.21
43 10 0.19
ACGTcount: A:0.23, C:0.15, G:0.39, T:0.22
Consensus pattern (43 bp):
GTCAACAGGATGACGTGGCAGGATGACGTGGCAGGTTGACTTA
Found at i:2188 original size:1 final size:1
Alignment explanation
Indices: 2182--2207 Score: 52
Period size: 1 Copynumber: 26.0 Consensus size: 1
2172 CCAGATCGGG
2182 AAAAAAAAAAAAAAAAAAAAAAAAAA
1 AAAAAAAAAAAAAAAAAAAAAAAAAA
2208 CTTAGGCCTC
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
1 25 1.00
ACGTcount: A:1.00, C:0.00, G:0.00, T:0.00
Consensus pattern (1 bp):
A
Found at i:2736 original size:22 final size:22
Alignment explanation
Indices: 2708--2751 Score: 61
Period size: 22 Copynumber: 2.0 Consensus size: 22
2698 TTTAGATTAA
* *
2708 TATAATCTTTATATGAAATTTT
1 TATAATCATCATATGAAATTTT
*
2730 TATAATCATCCTATGAAATTTT
1 TATAATCATCATATGAAATTTT
2752 GGTAACCACA
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
22 19 1.00
ACGTcount: A:0.36, C:0.09, G:0.05, T:0.50
Consensus pattern (22 bp):
TATAATCATCATATGAAATTTT
Found at i:2923 original size:22 final size:21
Alignment explanation
Indices: 2721--3124 Score: 170
Period size: 22 Copynumber: 18.5 Consensus size: 21
2711 AATCTTTATA
* * *
2721 TGAAATTTTTATAATCATCCTA
1 TGAAATTTTGATAA-CCTCCTT
* *
2743 TGAAATTTTGGTAACCACACTT
1 TGAAATTTTGATAACCTC-CTT
*
2765 TAAAATTTTGATAA-CTCCTTT
1 TGAAATTTTGATAACCTCC-TT
* * **
2786 TGAAATATTGATAGTCAACCTT
1 TGAAATTTTGATA-ACCTCCTT
* * *
2808 T-AAATTTTTACTAACATTCCTA
1 TGAAATTTTGA-TAAC-CTCCTT
*
2830 AGAAATTTTGATAACCTCCTT
1 TGAAATTTTGATAACCTCCTT
* * **
2851 ATAAAACTCCGATAACCTTCCTT
1 -TGAAATTTTGATAACC-TCCTT
* ** * **
2874 TAAAATTTAAAAAACCTCCAA
1 TGAAATTTTGATAACCTCCTT
*
2895 TGAAATTTTGATAACCAACCTT
1 TGAAATTTTGATAACC-TCCTT
* **
2917 TGAAATTTTGTTAACCTCCCAA
1 TGAAATTTTGATAACCT-CCTT
* *
2939 TGAAATTTGGATAACCTTCTT
1 TGAAATTTTGATAACCTCCTT
* * * *
2960 ATGAGATTCTGATAACATCGCTA
1 -TGAAATTTTGATAACCTC-CTT
*
2983 TGAAA-TTTGCATAACCTCCATA
1 TGAAATTTTG-ATAACCTCC-TT
* *
3005 TGAAATTCTGATAACCTCGTT
1 TGAAATTTTGATAACCTCCTT
* *
3026 ATGTAATTTTGATAACTTCCTT
1 -TGAAATTTTGATAACCTCCTT
* * *
3048 ATGAAATTTGGATAAACTCCATA
1 -TGAAATTTTGATAACCTCC-TT
* * *
3071 TCAAATTTTAATAACCTCACTA
1 TGAAATTTTGATAACCTC-CTT
*
3093 TGAAAATTTT-ATAATCT-CTGT
1 TG-AAATTTTGATAACCTCCT-T
3114 ATGAAATTTTG
1 -TGAAATTTTG
3125 GTAATCTCAT
Statistics
Matches: 280, Mismatches: 79, Indels: 46
0.69 0.20 0.11
Matches are distributed among these distances:
20 3 0.01
21 57 0.20
22 191 0.68
23 29 0.10
ACGTcount: A:0.36, C:0.17, G:0.09, T:0.38
Consensus pattern (21 bp):
TGAAATTTTGATAACCTCCTT
Found at i:2923 original size:43 final size:44
Alignment explanation
Indices: 2861--2954 Score: 109
Period size: 43 Copynumber: 2.2 Consensus size: 44
2851 ATAAAACTCC
** *
2861 GATAACCTTCCTTTAAAATTTAAAAAACCT-CCAATGAAATTTT
1 GATAACCAACCTTTAAAATTTAAAAAACCTCCCAATGAAATTTG
* ****
2904 GATAACCAACCTTTGAAATTTTGTTAACCTCCCAATGAAATTTG
1 GATAACCAACCTTTAAAATTTAAAAAACCTCCCAATGAAATTTG
2948 GATAACC
1 GATAACC
2955 TTCTTATGAG
Statistics
Matches: 42, Mismatches: 8, Indels: 1
0.82 0.16 0.02
Matches are distributed among these distances:
43 23 0.55
44 19 0.45
ACGTcount: A:0.38, C:0.20, G:0.09, T:0.33
Consensus pattern (44 bp):
GATAACCAACCTTTAAAATTTAAAAAACCTCCCAATGAAATTTG
Found at i:3209 original size:43 final size:44
Alignment explanation
Indices: 3116--3229 Score: 128
Period size: 43 Copynumber: 2.6 Consensus size: 44
3106 ATCTCTGTAT
3116 GAAATTTTGGTAA-TCTCATGATGAAATTCTGCTATCCTCCATATA
1 GAAATTTTGGTAACTCTC-T-ATGAAATTCTGCTATCCTCCATATA
* * *
3161 -AAATTTTGGTAACCTCTCTACGAAATTTTG-TATCCTCCCTA-A
1 GAAATTTTGGTAA-CTCTCTATGAAATTCTGCTATCCTCCATATA
*
3203 GAAATTTTGGTAAGCTCACTATGAAAT
1 GAAATTTTGGTAA-CTCTCTATGAAAT
3230 ATGGATAATC
Statistics
Matches: 60, Mismatches: 6, Indels: 8
0.81 0.08 0.11
Matches are distributed among these distances:
42 1 0.02
43 33 0.55
44 21 0.35
45 1 0.02
46 4 0.07
ACGTcount: A:0.32, C:0.18, G:0.13, T:0.37
Consensus pattern (44 bp):
GAAATTTTGGTAACTCTCTATGAAATTCTGCTATCCTCCATATA
Found at i:3524 original size:22 final size:22
Alignment explanation
Indices: 2886--3864 Score: 395
Period size: 22 Copynumber: 44.7 Consensus size: 22
2876 AAATTTAAAA
* *
2886 AACCT-CCAATGAAATTTTGAT
1 AACCTCCCTATGAAATTTTGGT
** * *
2907 AACCAACCTTTGAAATTTTGTT
1 AACCTCCCTATGAAATTTTGGT
*
2929 AACCTCCCAATGAAA-TTTGGAT
1 AACCTCCCTATGAAATTTTGG-T
* * * * *
2951 AACCTTCTTATGAGATTCTGAT
1 AACCTCCCTATGAAATTTTGGT
* * *
2973 AACATCGCTATGAAA-TTTGCAT
1 AACCTCCCTATGAAATTTTG-GT
* * *
2995 AACCTCCATATGAAATTCTGAT
1 AACCTCCCTATGAAATTTTGGT
** * *
3017 AACCTCGTTATGTAATTTTGAT
1 AACCTCCCTATGAAATTTTGGT
* *
3039 AACTTCCTTATGAAA-TTTGGAT
1 AACCTCCCTATGAAATTTTGG-T
* * * **
3061 AAACTCCATATCAAATTTTAAT
1 AACCTCCCTATGAAATTTTGGT
* *
3083 AACCTCACTATGAAAATTTT-AT
1 AACCTCCCTATG-AAATTTTGGT
* **
3105 AATCTCTGTATGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3127 AATCT-CATGATGAAATTCTGCT
1 AACCTCCCT-ATGAAATTTTGGT
* * *
3149 ATCCTCCATATAAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* *
3171 AACCTCTCTACGAAATTTT-GT
1 AACCTCCCTATGAAATTTTGGT
* *
3192 ATCCTCCCTAAGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * *
3214 AAGCTCACTATGAAA-TATGGAT
1 AACCTCCCTATGAAATTTTGG-T
* * * *
3236 AATCTCACTATAAAATTTTGGA
1 AACCTCCCTATGAAATTTTGGT
* * * *
3258 AACTTACCTTTGAAATTCTGGT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3280 AATCCT-CCTACGATATTTTCGC
1 AA-CCTCCCTATGAAATTTTGGT
**
3302 AACCTCATTATGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3324 -ACCTTACATACGAAATTCTGGT
1 AACC-TCCCTATGAAATTTTGGT
* *
3346 AACCT-CCTATAAAATTATGGT
1 AACCTCCCTATGAAATTTTGGT
* * *
3367 AACATCACTACGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * * * *
3389 AACCTTCATATTAAATTCTAGT
1 AACCTCCCTATGAAATTTTGGT
**
3411 AACC-CTAGTATGAAATTTTGGT
1 AACCTC-CCTATGAAATTTTGGT
** * * *
3433 AACCTTGCTATGAGATTTTTGC
1 AACCTCCCTATGAAATTTTGGT
* * * *
3455 AACTTCCGTGTG-AATTTCTAGT
1 AACCTCCCTATGAAATTT-TGGT
* * **
3477 AACCTCCATATAAAATTATT-CA
1 AACCTCCCTATGAAATT-TTGGT
3499 AACCTCCCTATGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * *
3521 AACCT--C-GTGAAAATTTGAT
1 AACCTCCCTATGAAATTTTGGT
* * *
3540 AACCTCCCTGTGAAATTCTGAT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3562 AACCTTCTTATGAAAGTTTGAT
1 AACCTCCCTATGAAATTTTGGT
*
3584 AACCTGCCTATGAAATTCTT-GT
1 AACCTCCCTATGAAATT-TTGGT
* * *
3606 AACTTCTCTGTGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3628 AACCTTCATGTGAAATACTATTAGT
1 AACCTCCCTATGAAAT--T-TTGGT
* * *
3653 AACCTCCGTACGAAATTTTGAT
1 AACCTCCCTATGAAATTTTGGT
* *
3675 AACCTCCCAATGATATTTTTGGT
1 AACCTCCCTATGA-AATTTTGGT
* * ***
3698 AACTTACCTAT-AAATTCCAGT
1 AACCTCCCTATGAAATTTTGGT
* *
3719 AA--TGCCTAT-AAATTTTTTGT
1 AACCTCCCTATGAAA-TTTTGGT
* *** * *
3739 AAACTCAAAATGAAATTCTGAT
1 AACCTCCCTATGAAATTTTGGT
*
3761 AACCTCCCTATGAAATTCT-GT
1 AACCTCCCTATGAAATTTTGGT
* * * *
3782 TACCTCGCAATTGAAATTTTGAT
1 AACCTCCCTA-TGAAATTTTGGT
*
3805 AACCTCACTATGAAATTTTGGT
1 AACCTCCCTATGAAATTTTGGT
* *
3827 AATCTACC-ATTGAAATTTTGGT
1 AACCTCCCTA-TGAAATTTTGGT
*
3849 AACTTCCCTATGAAAT
1 AACCTCCCTATGAAAT
3865 CTGATAAACC
Statistics
Matches: 698, Mismatches: 218, Indels: 83
0.70 0.22 0.08
Matches are distributed among these distances:
19 24 0.03
20 7 0.01
21 92 0.13
22 494 0.71
23 63 0.09
24 2 0.00
25 16 0.02
ACGTcount: A:0.33, C:0.19, G:0.12, T:0.37
Consensus pattern (22 bp):
AACCTCCCTATGAAATTTTGGT
Found at i:3537 original size:19 final size:19
Alignment explanation
Indices: 3509--3545 Score: 56
Period size: 19 Copynumber: 1.9 Consensus size: 19
3499 AACCTCCCTA
* *
3509 TGAAATTTTGGTAACCTCG
1 TGAAAATTTGATAACCTCG
3528 TGAAAATTTGATAACCTC
1 TGAAAATTTGATAACCTC
3546 CCTGTGAAAT
Statistics
Matches: 16, Mismatches: 2, Indels: 0
0.89 0.11 0.00
Matches are distributed among these distances:
19 16 1.00
ACGTcount: A:0.32, C:0.16, G:0.16, T:0.35
Consensus pattern (19 bp):
TGAAAATTTGATAACCTCG
Found at i:10127 original size:123 final size:124
Alignment explanation
Indices: 9952--10201 Score: 344
Period size: 123 Copynumber: 2.0 Consensus size: 124
9942 TAATTTTTAT
*
9952 AATTTATCTTGTAAACTCTTTTTATTTATAACTAGCGACTAAACTTGCAACTAAATTCTTCTTAA
1 AATTTATCTTGTAAACTCTTTTTATTTATAACTAGAGACTAAACTTGCAACTAAATTCTTCTTAA
* * * *
10017 TTATTAGATAG-T-GTAGTAGAACCCA-GCTAAGTAAAAAGTATTTTCTTATGGGCTAAG
66 TTATTAGACAGATAGTAGTAGAA-CCAGGCTAAGCAAAAAATATTTTCCTATGGGCTAAG
* * * *
10074 AATTTATCTTGTAAACTTTTTTTTATTTGTAACTAGAGATTAAACTTGCAACTAAGTTCTTCTTA
1 AATTTATCTTGTAAAC-TCTTTTTATTTATAACTAGAGACTAAACTTGCAACTAAATTCTTCTTA
*
10139 ATTATTAGACAGTATAAAGTCGTAGAACCAGGCTAAGCAAAAAATATTTTCCTATGGGCTAAG
65 ATTATTAGACAG-AT--AGTAGTAGAACCAGGCTAAGCAAAAAATATTTTCCTATGGGCTAAG
10202 TTAAAGTTGG
Statistics
Matches: 111, Mismatches: 10, Indels: 8
0.86 0.08 0.06
Matches are distributed among these distances:
122 16 0.14
123 54 0.49
125 1 0.01
127 3 0.03
128 37 0.33
ACGTcount: A:0.35, C:0.14, G:0.14, T:0.38
Consensus pattern (124 bp):
AATTTATCTTGTAAACTCTTTTTATTTATAACTAGAGACTAAACTTGCAACTAAATTCTTCTTAA
TTATTAGACAGATAGTAGTAGAACCAGGCTAAGCAAAAAATATTTTCCTATGGGCTAAG
Found at i:10369 original size:68 final size:68
Alignment explanation
Indices: 10260--10396 Score: 265
Period size: 68 Copynumber: 2.0 Consensus size: 68
10250 AAAATAAATG
10260 AAACTCAATTTTTCAAATAATTAAAAGTATGCAACCCAATTACAAGTGTGTTAACTTGCGCGGTA
1 AAACTCAATTTTTCAAATAATTAAAAGTATGCAACCCAATTACAAGTGTGTTAACTTGCGCGGTA
10325 GAC
66 GAC
*
10328 AAACTCAATTTTTCAAATAATTAAAAGTATGCAACCCAATTACAAGTGTGTTAACTTGCGCTGTA
1 AAACTCAATTTTTCAAATAATTAAAAGTATGCAACCCAATTACAAGTGTGTTAACTTGCGCGGTA
10393 GAC
66 GAC
10396 A
1 A
10397 TTTTATTTCC
Statistics
Matches: 68, Mismatches: 1, Indels: 0
0.99 0.01 0.00
Matches are distributed among these distances:
68 68 1.00
ACGTcount: A:0.39, C:0.18, G:0.14, T:0.30
Consensus pattern (68 bp):
AAACTCAATTTTTCAAATAATTAAAAGTATGCAACCCAATTACAAGTGTGTTAACTTGCGCGGTA
GAC
Found at i:11080 original size:12 final size:12
Alignment explanation
Indices: 11065--11089 Score: 50
Period size: 12 Copynumber: 2.1 Consensus size: 12
11055 CATCACATCA
11065 ACCAAACCAAAC
1 ACCAAACCAAAC
11077 ACCAAACCAAAC
1 ACCAAACCAAAC
11089 A
1 A
11090 ATTACACACA
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
12 13 1.00
ACGTcount: A:0.60, C:0.40, G:0.00, T:0.00
Consensus pattern (12 bp):
ACCAAACCAAAC
Found at i:11233 original size:23 final size:23
Alignment explanation
Indices: 11207--11266 Score: 111
Period size: 23 Copynumber: 2.6 Consensus size: 23
11197 TATACTAACA
11207 CAAACTTAGCTTCTAAGTAATCC
1 CAAACTTAGCTTCTAAGTAATCC
11230 CAAACTTAGCTTCTAAGTAATCC
1 CAAACTTAGCTTCTAAGTAATCC
*
11253 CAAACTTAGGTTCT
1 CAAACTTAGCTTCT
11267 GTTTGTTAAA
Statistics
Matches: 36, Mismatches: 1, Indels: 0
0.97 0.03 0.00
Matches are distributed among these distances:
23 36 1.00
ACGTcount: A:0.33, C:0.25, G:0.10, T:0.32
Consensus pattern (23 bp):
CAAACTTAGCTTCTAAGTAATCC
Found at i:12712 original size:18 final size:19
Alignment explanation
Indices: 12675--12713 Score: 53
Period size: 20 Copynumber: 2.1 Consensus size: 19
12665 CTCAACTTCT
12675 CTTAGCCCAAATCACAAACA
1 CTTAGCCCAAAT-ACAAACA
*
12695 CTTAGCCTAAAT-CAAACA
1 CTTAGCCCAAATACAAACA
12713 C
1 C
12714 AAAATACCCA
Statistics
Matches: 18, Mismatches: 1, Indels: 2
0.86 0.05 0.10
Matches are distributed among these distances:
18 7 0.39
20 11 0.61
ACGTcount: A:0.44, C:0.33, G:0.05, T:0.18
Consensus pattern (19 bp):
CTTAGCCCAAATACAAACA
Found at i:13336 original size:25 final size:25
Alignment explanation
Indices: 13306--13414 Score: 164
Period size: 25 Copynumber: 4.3 Consensus size: 25
13296 CCCCATGGTT
*
13306 CAATACAAAGCCCACACCTATATGG
1 CAATACAAAGCCCACACCTATGTGG
13331 CAATACAAAGCCCACACCTATGTGG
1 CAATACAAAGCCCACACCTATGTGG
*
13356 CAATACAAAGCCCACACCTACGTGG
1 CAATACAAAGCCCACACCTATGTGG
* *
13381 CAATACAAAGCCCACTATCATACGTGG
1 CAATACAAAGCCCAC-A-CCTATGTGG
13408 CAATACA
1 CAATACA
13415 TTGGTGATCG
Statistics
Matches: 79, Mismatches: 3, Indels: 2
0.94 0.04 0.02
Matches are distributed among these distances:
25 63 0.80
26 1 0.01
27 15 0.19
ACGTcount: A:0.39, C:0.32, G:0.14, T:0.16
Consensus pattern (25 bp):
CAATACAAAGCCCACACCTATGTGG
Found at i:13832 original size:30 final size:28
Alignment explanation
Indices: 13798--13854 Score: 78
Period size: 30 Copynumber: 2.0 Consensus size: 28
13788 CCTCCATTTA
* *
13798 ATCTATTTCCCTTAATTCTATTATCTATTC
1 ATCTATTTCCATT-ATT-TATCATCTATTC
13828 ATCTATTTCCATTATTTATCATCTATT
1 ATCTATTTCCATTATTTATCATCTATT
13855 TGTTGAAGTC
Statistics
Matches: 25, Mismatches: 2, Indels: 2
0.86 0.07 0.07
Matches are distributed among these distances:
28 10 0.40
29 3 0.12
30 12 0.48
ACGTcount: A:0.25, C:0.21, G:0.00, T:0.54
Consensus pattern (28 bp):
ATCTATTTCCATTATTTATCATCTATTC
Found at i:15449 original size:30 final size:30
Alignment explanation
Indices: 15413--15471 Score: 82
Period size: 30 Copynumber: 2.0 Consensus size: 30
15403 CGTTAACTAC
* *
15413 TCAATTTAGGAAACGTTTTGCCCTAAATTA
1 TCAATTTAGAAAACGGTTTGCCCTAAATTA
* *
15443 TCAATTTCGAAAACGGTTTGTCCTAAATT
1 TCAATTTAGAAAACGGTTTGCCCTAAATT
15472 GAGCAATTAT
Statistics
Matches: 25, Mismatches: 4, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
30 25 1.00
ACGTcount: A:0.32, C:0.17, G:0.14, T:0.37
Consensus pattern (30 bp):
TCAATTTAGAAAACGGTTTGCCCTAAATTA
Found at i:15638 original size:18 final size:18
Alignment explanation
Indices: 15617--15651 Score: 52
Period size: 18 Copynumber: 1.9 Consensus size: 18
15607 TAATATACTA
15617 AAAAAAGAAAAATAAAAG
1 AAAAAAGAAAAATAAAAG
**
15635 AAAATGGAAAAATAAAA
1 AAAAAAGAAAAATAAAA
15652 AGTGAAAATA
Statistics
Matches: 15, Mismatches: 2, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
18 15 1.00
ACGTcount: A:0.80, C:0.00, G:0.11, T:0.09
Consensus pattern (18 bp):
AAAAAAGAAAAATAAAAG
Found at i:16714 original size:15 final size:15
Alignment explanation
Indices: 16694--16723 Score: 51
Period size: 15 Copynumber: 2.0 Consensus size: 15
16684 ATCAGGCTGC
*
16694 CACGATACACGATAT
1 CACGATACACAATAT
16709 CACGATACACAATAT
1 CACGATACACAATAT
16724 TTCAACCGTA
Statistics
Matches: 14, Mismatches: 1, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
15 14 1.00
ACGTcount: A:0.43, C:0.27, G:0.10, T:0.20
Consensus pattern (15 bp):
CACGATACACAATAT
Done.