Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019470.1 Corchorus olitorius cultivar O-4 contig19503, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7053
ACGTcount: A:0.34, C:0.23, G:0.13, T:0.31


Found at i:1456 original size:8 final size:7

Alignment explanation


    Indices: 1436--1475  Score: 62
    Period size: 7  Copynumber: 5.4  Consensus size: 7

       1426 ATCAGGCTGC

                   
       1436 CACGATA
          1 CACGATA

                   
       1443 CACGATA
          1 CACGATA

                    
       1450 TCACGATA
          1 -CACGATA

                   
       1458 CACGATA
          1 CACGATA

                    
       1465 TCACGATA
          1 -CACGATA

               
       1473 CAC
          1 CAC

       1476 AATATTTCAA


Statistics
Matches: 31,  Mismatches: 0, Indels: 4
        0.89            0.00        0.11

Matches are distributed among these distances:
   7   17  0.55
   8   14  0.45

ACGTcount: A:0.40, C:0.30, G:0.12, T:0.17


Consensus pattern (7 bp):   
CACGATA

Found at i:1456 original size:15 final size:15

Alignment explanation


    Indices: 1436--1480  Score: 81
    Period size: 15  Copynumber: 3.0  Consensus size: 15

       1426 ATCAGGCTGC

                           
       1436 CACGATACACGATAT
          1 CACGATACACGATAT

                           
       1451 CACGATACACGATAT
          1 CACGATACACGATAT

                      *    
       1466 CACGATACACAATAT
          1 CACGATACACGATAT

       1481 TTCAACCGTA


Statistics
Matches: 29,  Mismatches: 1, Indels: 0
        0.97            0.03        0.00

Matches are distributed among these distances:
  15   29  1.00

ACGTcount: A:0.42, C:0.27, G:0.11, T:0.20


Consensus pattern (15 bp):   
CACGATACACGATAT
Done.