Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019471.1 Corchorus olitorius cultivar O-4 contig19504, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  32064

Tables:   1   

This is table  1  of  1  ( 15 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--25
2
12.5
2
100
0
50
48
0
0
52
1.00
5272--5319
21
2.2
22
85
3
62
39
6
6
47
1.54
5584--5664
3
27.3
3
88
7
121
33
1
1
64
1.10
8657--8752
48
2.0
48
91
0
156
40
9
17
32
1.82
14919--15159
106
2.3
104
87
4
335
41
7
8
41
1.65
19673--19726
21
2.5
22
77
17
58
48
3
20
27
1.66
19676--19735
29
2.1
29
100
0
120
48
3
20
28
1.65
20507--20536
13
2.3
13
94
0
51
30
33
0
36
1.58
20836--20909
29
2.5
31
82
6
98
29
22
12
35
1.91
28410--28764
118
3.0
118
90
4
606
34
24
7
33
1.83
29623--29658
17
2.1
17
94
0
63
41
22
5
30
1.76
30170--30310
22
6.6
22
77
10
125
35
11
12
41
1.78
30177--30229
20
2.5
21
84
9
72
33
9
13
43
1.76
30145--30310
22
7.8
20
75
15
81
34
10
13
40
1.80
30338--30363
12
2.2
12
100
0
52
53
0
7
38
1.30

Tables:   1

The End!