Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019472.1 Corchorus olitorius cultivar O-4 contig19505, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 43105
ACGTcount: A:0.34, C:0.18, G:0.17, T:0.32
Found at i:1419 original size:21 final size:19
Alignment explanation
Indices: 1393--1451 Score: 73
Period size: 19 Copynumber: 3.0 Consensus size: 19
1383 CGCTGCTCTA
*
1393 ATAATCCCATCTGTACAGT
1 ATAATCTCATCTGTACAGT
*
1412 ACATAATCTAATCTGTACAGT
1 --ATAATCTCATCTGTACAGT
*
1433 GTAATCTCATCTGTACAGT
1 ATAATCTCATCTGTACAGT
1452 TACCAAACAG
Statistics
Matches: 34, Mismatches: 4, Indels: 2
0.85 0.10 0.05
Matches are distributed among these distances:
19 17 0.50
21 17 0.50
ACGTcount: A:0.32, C:0.22, G:0.12, T:0.34
Consensus pattern (19 bp):
ATAATCTCATCTGTACAGT
Found at i:3845 original size:45 final size:45
Alignment explanation
Indices: 3794--3920 Score: 218
Period size: 45 Copynumber: 2.8 Consensus size: 45
3784 AATTCTACTT
*
3794 CATCTCTAGGTAATTCATCAAAATAAAGCTAATATTATACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAACTAATATTATACTCCTC
*
3839 CATCTCTAGGTAATTCATCAAAATAAAACTAATATTCTACTCCTC
1 CATCTCTAGGTAATTCATCAAAATAAAACTAATATTATACTCCTC
* *
3884 CATCTGTAGGTAATTCATCAAAATAAACCTAATATTA
1 CATCTCTAGGTAATTCATCAAAATAAAACTAATATTA
3921 ATTGTTGCTT
Statistics
Matches: 77, Mismatches: 5, Indels: 0
0.94 0.06 0.00
Matches are distributed among these distances:
45 77 1.00
ACGTcount: A:0.39, C:0.21, G:0.06, T:0.33
Consensus pattern (45 bp):
CATCTCTAGGTAATTCATCAAAATAAAACTAATATTATACTCCTC
Found at i:4890 original size:2 final size:2
Alignment explanation
Indices: 4877--4919 Score: 77
Period size: 2 Copynumber: 21.0 Consensus size: 2
4867 ACTAAAAATA
4877 AT AT AT AGT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
1 AT AT AT A-T AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT AT
4920 GTTCAATAGC
Statistics
Matches: 40, Mismatches: 0, Indels: 2
0.95 0.00 0.05
Matches are distributed among these distances:
2 38 0.95
3 2 0.05
ACGTcount: A:0.49, C:0.00, G:0.02, T:0.49
Consensus pattern (2 bp):
AT
Found at i:7901 original size:15 final size:17
Alignment explanation
Indices: 7873--7918 Score: 60
Period size: 17 Copynumber: 2.8 Consensus size: 17
7863 ATTACAAAGT
*
7873 TTATACATAAAATACAAA
1 TTATACA-AAAATAAAAA
7891 -TA-ACAAAAATAAAAA
1 TTATACAAAAATAAAAA
7906 TTATACAAAAATA
1 TTATACAAAAATA
7919 TATTTATGAA
Statistics
Matches: 25, Mismatches: 1, Indels: 5
0.81 0.03 0.16
Matches are distributed among these distances:
15 9 0.36
16 5 0.20
17 11 0.44
ACGTcount: A:0.67, C:0.09, G:0.00, T:0.24
Consensus pattern (17 bp):
TTATACAAAAATAAAAA
Found at i:8073 original size:2 final size:2
Alignment explanation
Indices: 8066--8094 Score: 51
Period size: 2 Copynumber: 15.0 Consensus size: 2
8056 AAGGGAAGAT
8066 TA TA TA TA TA TA TA TA TA TA TA TA T- TA TA
1 TA TA TA TA TA TA TA TA TA TA TA TA TA TA TA
8095 CTACAAATTA
Statistics
Matches: 26, Mismatches: 0, Indels: 2
0.93 0.00 0.07
Matches are distributed among these distances:
1 1 0.04
2 25 0.96
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:8142 original size:16 final size:16
Alignment explanation
Indices: 8121--8154 Score: 68
Period size: 16 Copynumber: 2.1 Consensus size: 16
8111 GATTTATTAT
8121 ATTTATTTAATATATA
1 ATTTATTTAATATATA
8137 ATTTATTTAATATATA
1 ATTTATTTAATATATA
8153 AT
1 AT
8155 ATATAAATTA
Statistics
Matches: 18, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
16 18 1.00
ACGTcount: A:0.44, C:0.00, G:0.00, T:0.56
Consensus pattern (16 bp):
ATTTATTTAATATATA
Found at i:9318 original size:13 final size:13
Alignment explanation
Indices: 9302--9326 Score: 50
Period size: 13 Copynumber: 1.9 Consensus size: 13
9292 AAGTCAACAC
9302 GCCACGTCATCCT
1 GCCACGTCATCCT
9315 GCCACGTCATCC
1 GCCACGTCATCC
9327 ATTGACTGTT
Statistics
Matches: 12, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
13 12 1.00
ACGTcount: A:0.16, C:0.48, G:0.16, T:0.20
Consensus pattern (13 bp):
GCCACGTCATCCT
Found at i:9636 original size:18 final size:18
Alignment explanation
Indices: 9613--9751 Score: 67
Period size: 18 Copynumber: 8.4 Consensus size: 18
9603 CAATTTTCTG
9613 CCTGTTTGACCTCTTGGT
1 CCTGTTTGACCTCTTGGT
*
9631 CCTGTTTTAACC-CTTTGGT
1 CCTG-TTTGACCTC-TTGGT
9650 CCTGTTT----T-TT-G-
1 CCTGTTTGACCTCTTGGT
* *
9661 CTTGTTCGACCTCTTGGT
1 CCTGTTTGACCTCTTGGT
9679 CCTGTTTGACCT-TTCGGT
1 CCTGTTTGACCTCTT-GGT
*
9697 CCTGTTT----T-AT-G-
1 CCTGTTTGACCTCTTGGT
* *
9708 CATGTTTTGACCCCTTGGT
1 CCTG-TTTGACCTCTTGGT
*
9727 CCTGTTTGACCTTTTGGT
1 CCTGTTTGACCTCTTGGT
9745 CCTGTTT
1 CCTGTTT
9752 TCTGCCTGAT
Statistics
Matches: 90, Mismatches: 12, Indels: 38
0.64 0.09 0.27
Matches are distributed among these distances:
11 8 0.09
12 5 0.06
13 2 0.02
14 2 0.02
15 1 0.01
16 2 0.02
17 4 0.04
18 48 0.53
19 18 0.20
ACGTcount: A:0.06, C:0.25, G:0.20, T:0.48
Consensus pattern (18 bp):
CCTGTTTGACCTCTTGGT
Found at i:9676 original size:48 final size:47
Alignment explanation
Indices: 9588--9780 Score: 194
Period size: 48 Copynumber: 4.1 Consensus size: 47
9578 AGTTTGCTCC
* ** * *
9588 GTTTGA-CCTTTCGTCCAATTTTCTGCCTGTTTGACCTCTTGGTCCT
1 GTTTGACCCTTTGGTCCTGTTTTATGCATGTTTGACCTCTTGGTCCT
* * * *
9634 GTTTTAACCCTTTGGTCCTGTTTTTTGCTTGTTCGACCTCTTGGTCCT
1 G-TTTGACCCTTTGGTCCTGTTTTATGCATGTTTGACCTCTTGGTCCT
*
9682 GTTTGA-CCTTTCGGTCCTGTTTTATGCATGTTTTGACCCCTTGGTCCT
1 GTTTGACCCTTT-GGTCCTGTTTTATGCATG-TTTGACCTCTTGGTCCT
* * * * *
9730 GTTTGACCTTTTGGTCCTGTTTTCTGCCTGATTGACCT-TTCTGTCCT
1 GTTTGACCCTTTGGTCCTGTTTTATGCATGTTTGACCTCTT-GGTCCT
9777 GTTT
1 GTTT
9781 TTTTAGCCCT
Statistics
Matches: 123, Mismatches: 18, Indels: 11
0.81 0.12 0.07
Matches are distributed among these distances:
46 8 0.07
47 39 0.32
48 72 0.59
49 4 0.03
ACGTcount: A:0.07, C:0.25, G:0.19, T:0.48
Consensus pattern (47 bp):
GTTTGACCCTTTGGTCCTGTTTTATGCATGTTTGACCTCTTGGTCCT
Found at i:15163 original size:22 final size:24
Alignment explanation
Indices: 15138--15181 Score: 65
Period size: 22 Copynumber: 1.9 Consensus size: 24
15128 GGTGGAAGAG
*
15138 ATTTGAAA-AGGGT-GTTGAAATC
1 ATTTGAAACAAGGTCGTTGAAATC
15160 ATTTGAAACAAGGTCGTTGAAA
1 ATTTGAAACAAGGTCGTTGAAA
15182 AACACTTGAA
Statistics
Matches: 19, Mismatches: 1, Indels: 2
0.86 0.05 0.09
Matches are distributed among these distances:
22 8 0.42
23 4 0.21
24 7 0.37
ACGTcount: A:0.39, C:0.07, G:0.25, T:0.30
Consensus pattern (24 bp):
ATTTGAAACAAGGTCGTTGAAATC
Found at i:15632 original size:10 final size:10
Alignment explanation
Indices: 15617--15648 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
15607 TATTATGTGA
15617 ATTAAGCTCT
1 ATTAAGCTCT
15627 ATTAAGCTCT
1 ATTAAGCTCT
*
15637 ATTATGCTCT
1 ATTAAGCTCT
15647 AT
1 AT
15649 CACACCCTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (10 bp):
ATTAAGCTCT
Found at i:17147 original size:20 final size:21
Alignment explanation
Indices: 17122--17161 Score: 64
Period size: 20 Copynumber: 2.0 Consensus size: 21
17112 TAAAAACTAC
17122 AAGAACTCCG-AATGGAGTAT
1 AAGAACTCCGCAATGGAGTAT
*
17142 AAGAACTCCGCGATGGAGTA
1 AAGAACTCCGCAATGGAGTA
17162 AAAACCATAA
Statistics
Matches: 18, Mismatches: 1, Indels: 1
0.90 0.05 0.05
Matches are distributed among these distances:
20 10 0.56
21 8 0.44
ACGTcount: A:0.38, C:0.17, G:0.28, T:0.17
Consensus pattern (21 bp):
AAGAACTCCGCAATGGAGTAT
Found at i:17172 original size:28 final size:28
Alignment explanation
Indices: 17140--17194 Score: 92
Period size: 28 Copynumber: 2.0 Consensus size: 28
17130 CGAATGGAGT
17140 ATAAGAACTCCGCGATGGAGTAAAAACC
1 ATAAGAACTCCGCGATGGAGTAAAAACC
* *
17168 ATAAGAACTCCGCGATTGAGTATAAAC
1 ATAAGAACTCCGCGATGGAGTAAAAAC
17195 TAACACGACG
Statistics
Matches: 25, Mismatches: 2, Indels: 0
0.93 0.07 0.00
Matches are distributed among these distances:
28 25 1.00
ACGTcount: A:0.42, C:0.20, G:0.20, T:0.18
Consensus pattern (28 bp):
ATAAGAACTCCGCGATGGAGTAAAAACC
Found at i:17437 original size:10 final size:10
Alignment explanation
Indices: 17422--17453 Score: 55
Period size: 10 Copynumber: 3.2 Consensus size: 10
17412 TATTATGTGA
17422 ATTAAGCTCT
1 ATTAAGCTCT
17432 ATTAAGCTCT
1 ATTAAGCTCT
*
17442 ATTATGCTCT
1 ATTAAGCTCT
17452 AT
1 AT
17454 CACACCCTCC
Statistics
Matches: 21, Mismatches: 1, Indels: 0
0.95 0.05 0.00
Matches are distributed among these distances:
10 21 1.00
ACGTcount: A:0.28, C:0.19, G:0.09, T:0.44
Consensus pattern (10 bp):
ATTAAGCTCT
Found at i:19639 original size:30 final size:29
Alignment explanation
Indices: 19596--19654 Score: 91
Period size: 30 Copynumber: 2.0 Consensus size: 29
19586 ATTTTACTAG
* *
19596 AAATATTTATTAATATGTAATAAATATTA
1 AAATATCTATTAATATGCAATAAATATTA
19625 AAATATCTATTTAATATGCAATAAATATTA
1 AAATATCTA-TTAATATGCAATAAATATTA
19655 TTAGAAATAA
Statistics
Matches: 27, Mismatches: 2, Indels: 1
0.90 0.07 0.03
Matches are distributed among these distances:
29 8 0.30
30 19 0.70
ACGTcount: A:0.51, C:0.03, G:0.03, T:0.42
Consensus pattern (29 bp):
AAATATCTATTAATATGCAATAAATATTA
Found at i:21826 original size:28 final size:28
Alignment explanation
Indices: 21789--21842 Score: 74
Period size: 28 Copynumber: 1.9 Consensus size: 28
21779 ACCACGTGGC
21789 ATTTAATTAACTTAAAATTTAAAATAAAA
1 ATTTAATTAACTTAAAA-TTAAAATAAAA
* *
21818 ATTT-ATTAATTTTAAATTAAAATAA
1 ATTTAATTAACTTAAAATTAAAATAA
21843 CAAGTAATTT
Statistics
Matches: 23, Mismatches: 2, Indels: 2
0.85 0.07 0.07
Matches are distributed among these distances:
27 9 0.39
28 10 0.43
29 4 0.17
ACGTcount: A:0.56, C:0.02, G:0.00, T:0.43
Consensus pattern (28 bp):
ATTTAATTAACTTAAAATTAAAATAAAA
Found at i:21952 original size:38 final size:38
Alignment explanation
Indices: 21901--22021 Score: 111
Period size: 38 Copynumber: 3.1 Consensus size: 38
21891 TTCACGACAT
* *
21901 CTTCTCCGACAACCCCAACACCGACAACCCTCTGGCTC
1 CTTCTCTGACAACCCCAACACCAACAACCCTCTGGCTC
** * *
21939 CTTCTCTGACAACCCCTCTGCCTTCCAA-AATCCCTCTGGCTT
1 CTTCTCTGACAA-CCC-C-AAC-ACCAACAA-CCCTCTGGCTC
*
21981 CTTCT-TCGACAACCCCAACACCAACAACCCTCCGGCTC
1 CTTCTCT-GACAACCCCAACACCAACAACCCTCTGGCTC
22019 CTT
1 CTT
22022 GATGCGACCA
Statistics
Matches: 65, Mismatches: 11, Indels: 14
0.72 0.12 0.16
Matches are distributed among these distances:
38 27 0.42
39 6 0.09
40 2 0.03
41 7 0.11
42 23 0.35
ACGTcount: A:0.21, C:0.47, G:0.09, T:0.22
Consensus pattern (38 bp):
CTTCTCTGACAACCCCAACACCAACAACCCTCTGGCTC
Found at i:27527 original size:36 final size:40
Alignment explanation
Indices: 27438--27528 Score: 109
Period size: 42 Copynumber: 2.3 Consensus size: 40
27428 AATACTCCTT
**
27438 CTCCGACAACCCCTCTGCCTTCCAAAATCCCTTTGGCTTCTT
1 CTCCGACAACCCCTCTGCCTTCCAAAATCCCTTT-GC-TCCG
*
27480 CTCCGACAACCCCTTTGCCTTCCAAAAT-CC-TT-C-CCG
1 CTCCGACAACCCCTCTGCCTTCCAAAATCCCTTTGCTCCG
27516 CTCCGACAACCCC
1 CTCCGACAACCCC
27529 AGAAAACCCT
Statistics
Matches: 46, Mismatches: 3, Indels: 6
0.84 0.05 0.11
Matches are distributed among these distances:
36 14 0.30
38 1 0.02
40 2 0.04
41 2 0.04
42 27 0.59
ACGTcount: A:0.19, C:0.47, G:0.09, T:0.25
Consensus pattern (40 bp):
CTCCGACAACCCCTCTGCCTTCCAAAATCCCTTTGCTCCG
Found at i:28497 original size:21 final size:24
Alignment explanation
Indices: 28468--28518 Score: 72
Period size: 22 Copynumber: 2.2 Consensus size: 24
28458 TTTTGAACTC
28468 ATTATT-TATTATTTAA-AATATAT
1 ATTATTAT-TTATTTAATAATATAT
28491 -TTATTATTTATTTAATAATATAT
1 ATTATTATTTATTTAATAATATAT
28514 ATTAT
1 ATTAT
28519 ATCTAAGATA
Statistics
Matches: 25, Mismatches: 0, Indels: 5
0.83 0.00 0.17
Matches are distributed among these distances:
22 13 0.52
23 8 0.32
24 4 0.16
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (24 bp):
ATTATTATTTATTTAATAATATAT
Found at i:28513 original size:25 final size:25
Alignment explanation
Indices: 28468--28516 Score: 64
Period size: 25 Copynumber: 2.0 Consensus size: 25
28458 TTTTGAACTC
*
28468 ATTATTTATTATTTAAAATATATTT
1 ATTATTTATTATATAAAATATATTT
*
28493 ATTATTTATT-TAATAATATATATT
1 ATTATTTATTAT-ATAAAATATATT
28517 ATATCTAAGA
Statistics
Matches: 21, Mismatches: 2, Indels: 2
0.84 0.08 0.08
Matches are distributed among these distances:
24 1 0.05
25 20 0.95
ACGTcount: A:0.41, C:0.00, G:0.00, T:0.59
Consensus pattern (25 bp):
ATTATTTATTATATAAAATATATTT
Found at i:33954 original size:21 final size:21
Alignment explanation
Indices: 33930--33978 Score: 89
Period size: 21 Copynumber: 2.3 Consensus size: 21
33920 AGATAATGTC
33930 CGTAGCAAATGTAAATAAGCT
1 CGTAGCAAATGTAAATAAGCT
*
33951 CGTAGCAACTGTAAATAAGCT
1 CGTAGCAAATGTAAATAAGCT
33972 CGTAGCA
1 CGTAGCA
33979 TATAAGAATA
Statistics
Matches: 27, Mismatches: 1, Indels: 0
0.96 0.04 0.00
Matches are distributed among these distances:
21 27 1.00
ACGTcount: A:0.39, C:0.18, G:0.20, T:0.22
Consensus pattern (21 bp):
CGTAGCAAATGTAAATAAGCT
Found at i:34032 original size:33 final size:33
Alignment explanation
Indices: 33990--34064 Score: 150
Period size: 33 Copynumber: 2.3 Consensus size: 33
33980 ATAAGAATAT
33990 GTCCGTAGCCATGTGAATACGCTATCGTAGCTA
1 GTCCGTAGCCATGTGAATACGCTATCGTAGCTA
34023 GTCCGTAGCCATGTGAATACGCTATCGTAGCTA
1 GTCCGTAGCCATGTGAATACGCTATCGTAGCTA
34056 GTCCGTAGC
1 GTCCGTAGC
34065 TAAATTCATT
Statistics
Matches: 42, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
33 42 1.00
ACGTcount: A:0.23, C:0.25, G:0.25, T:0.27
Consensus pattern (33 bp):
GTCCGTAGCCATGTGAATACGCTATCGTAGCTA
Found at i:36730 original size:20 final size:20
Alignment explanation
Indices: 36705--36758 Score: 108
Period size: 20 Copynumber: 2.7 Consensus size: 20
36695 TATTGGACAA
36705 TGAACATTCATAATCCAAGC
1 TGAACATTCATAATCCAAGC
36725 TGAACATTCATAATCCAAGC
1 TGAACATTCATAATCCAAGC
36745 TGAACATTCATAAT
1 TGAACATTCATAAT
36759 AGAAAAGAAA
Statistics
Matches: 34, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
20 34 1.00
ACGTcount: A:0.41, C:0.22, G:0.09, T:0.28
Consensus pattern (20 bp):
TGAACATTCATAATCCAAGC
Found at i:37890 original size:63 final size:63
Alignment explanation
Indices: 37814--37986 Score: 247
Period size: 71 Copynumber: 2.6 Consensus size: 63
37804 TACACAAACA
*
37814 AACATATTCAAGTTTGAAAGCAAGTACTTGGAAATTGAATACGTTGGGAACATTTATTATTTG
1 AACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAATACGTTGGGAACATTTATTATTTG
*
37877 AACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAAACTAAAGATATGTTGGGAACATTTAT
1 AACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTG-------A-ATACGTTGGGAACATTTAT
37942 TATTTG
58 TATTTG
*
37948 AACATATTCAAGTTTGAAAGCAAGTATTTGGAAGTTGAA
1 AACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAA
37987 AACTAAAGAT
Statistics
Matches: 99, Mismatches: 3, Indels: 16
0.84 0.03 0.14
Matches are distributed among these distances:
63 37 0.37
64 1 0.01
70 1 0.01
71 60 0.61
ACGTcount: A:0.39, C:0.08, G:0.19, T:0.34
Consensus pattern (63 bp):
AACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAATACGTTGGGAACATTTATTATTTG
Found at i:37972 original size:71 final size:72
Alignment explanation
Indices: 37852--38004 Score: 281
Period size: 71 Copynumber: 2.1 Consensus size: 72
37842 TGGAAATTGA
37852 ATACGTTGGGAACATTTATTATTTGAACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTG-AA
1 ATACGTTGGGAACATTTATTATTTGAACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAAA
37916 ACTAAAG
66 ACTAAAG
* *
37923 ATATGTTGGGAACATTTATTATTTGAACATATTCAAGTTTGAAAGCAAGTATTTGGAAGTTGAAA
1 ATACGTTGGGAACATTTATTATTTGAACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAAA
37988 ACTAAAG
66 ACTAAAG
37995 ATACGTTGGG
1 ATACGTTGGG
38005 CTCAAAATGT
Statistics
Matches: 78, Mismatches: 3, Indels: 1
0.95 0.04 0.01
Matches are distributed among these distances:
71 60 0.77
72 18 0.23
ACGTcount: A:0.38, C:0.08, G:0.20, T:0.34
Consensus pattern (72 bp):
ATACGTTGGGAACATTTATTATTTGAACATATTCAAGTTTGAAAGCAAGTATTTGGAAATTGAAA
ACTAAAG
Found at i:39125 original size:26 final size:26
Alignment explanation
Indices: 39093--39150 Score: 116
Period size: 26 Copynumber: 2.2 Consensus size: 26
39083 GTGTTTGAGT
39093 GTGAGCGGCGGTGAGGGTAAGGAAGA
1 GTGAGCGGCGGTGAGGGTAAGGAAGA
39119 GTGAGCGGCGGTGAGGGTAAGGAAGA
1 GTGAGCGGCGGTGAGGGTAAGGAAGA
39145 GTGAGC
1 GTGAGC
39151 TAGCGGCTGT
Statistics
Matches: 32, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
26 32 1.00
ACGTcount: A:0.26, C:0.09, G:0.53, T:0.12
Consensus pattern (26 bp):
GTGAGCGGCGGTGAGGGTAAGGAAGA
Done.