Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019473.1 Corchorus olitorius cultivar O-4 contig19506, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 22166
ACGTcount: A:0.30, C:0.17, G:0.20, T:0.33


Found at i:1253 original size:28 final size:28

Alignment explanation


    Indices: 1207--1265  Score: 77
    Period size: 26  Copynumber: 2.1  Consensus size: 28

       1197 AAGAACTGAG

                          *               
       1207 ACTAGACTCGAAACTGACTCGAAAAAACAA
          1 ACTAGACTCGAAACCGACTC--AAAAACAA

                                        
       1237 ACTA-ACTC-AAACCGACTCAAAAACAA
          1 ACTAGACTCGAAACCGACTCAAAAACAA

               
       1263 ACT
          1 ACT

       1266 CAAATAAAAA


Statistics
Matches: 28,  Mismatches: 1, Indels: 4
        0.85            0.03        0.12

Matches are distributed among these distances:
  26   11  0.39
  28    9  0.32
  29    4  0.14
  30    4  0.14

ACGTcount: A:0.51, C:0.27, G:0.08, T:0.14


Consensus pattern (28 bp):   
ACTAGACTCGAAACCGACTCAAAAACAA
Done.