Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019475.1 Corchorus olitorius cultivar O-4 contig19508, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7354
ACGTcount: A:0.31, C:0.16, G:0.17, T:0.36


Found at i:34 original size:12 final size:12

Alignment explanation


    Indices: 17--41  Score: 50
    Period size: 12  Copynumber: 2.1  Consensus size: 12

          7 GCTTTAACTA

                        
         17 GCCATTTCCTTT
          1 GCCATTTCCTTT

                        
         29 GCCATTTCCTTT
          1 GCCATTTCCTTT

             
         41 G
          1 G

         42 AGAGAGAATT


Statistics
Matches: 13,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  12   13  1.00

ACGTcount: A:0.08, C:0.32, G:0.12, T:0.48


Consensus pattern (12 bp):   
GCCATTTCCTTT
Done.