Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019478.1 Corchorus olitorius cultivar O-4 contig19511, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  20662

Tables:   1   

This is table  1  of  1  ( 21 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2459--2595
22
6.3
22
73
10
111
35
8
18
36
1.82
2456--3659
66
18.6
65
67
15
254
37
9
16
35
1.81
2461--2587
44
2.9
44
78
4
139
37
9
16
36
1.81
2597--2645
22
2.1
22
81
7
53
34
6
16
42
1.73
2690--3130
22
19.9
22
71
11
220
38
9
16
35
1.81
3141--3456
172
1.8
170
79
10
367
37
9
17
36
1.82
3448--3535
45
2.0
45
84
4
115
32
11
18
37
1.86
3143--3659
22
23.7
22
69
15
195
38
9
15
35
1.81
5252--5368
22
5.4
22
76
9
105
35
6
18
39
1.78
5225--5400
44
4.1
43
78
7
169
35
6
18
39
1.77
7202--7397
44
4.5
44
81
3
207
35
8
19
36
1.82
7202--7414
22
9.7
22
78
5
182
35
8
19
36
1.82
8457--8550
45
2.2
44
88
7
140
39
21
4
35
1.73
9326--9590
107
2.5
105
89
4
392
41
8
8
41
1.66
13048--13106
29
2.0
29
96
0
109
38
10
11
38
1.76
13343--13427
44
1.9
45
88
7
129
23
15
28
32
1.95
13405--13490
45
1.9
45
90
0
136
22
15
29
33
1.94
14883--14918
17
2.1
17
94
0
63
33
0
8
58
1.28
16344--16389
23
2.0
23
100
0
92
39
17
26
17
1.91
17664--17695
2
16.0
2
100
0
64
50
0
0
50
1.00
18473--18567
46
2.2
44
87
9
133
37
20
6
35
1.78

Tables:   1

The End!