Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019479.1 Corchorus olitorius cultivar O-4 contig19512, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  40464

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1111--1159
21
2.5
20
87
9
66
57
0
4
38
1.18
1111--1154
15
3.0
14
80
9
52
56
0
2
40
1.11
1433--1556
63
2.0
64
91
4
207
45
9
5
38
1.61
4114--4182
36
1.9
36
87
0
102
23
11
8
56
1.62
4695--5106
206
2.0
201
94
3
727
43
8
10
36
1.70
5178--5224
25
1.9
24
95
4
85
55
8
6
29
1.55
5215--5298
42
2.0
40
90
4
132
36
4
7
51
1.51
6647--6743
29
3.4
27
87
8
131
22
5
18
53
1.64
6729--6793
26
2.5
26
100
0
130
32
10
15
41
1.81
24404--24504
30
3.4
29
84
4
112
16
28
15
38
1.90
24628--24663
17
2.1
17
94
0
63
25
22
19
33
1.97
27967--28094
31
4.1
31
82
4
150
33
24
21
20
1.97
27964--28109
62
2.3
62
82
3
159
35
23
20
19
1.96
33199--33336
72
1.9
72
87
0
204
30
15
18
34
1.93
37130--37165
2
19.0
2
88
11
58
52
0
0
47
1.00
38802--39064
122
2.1
128
87
7
394
50
1
11
36
1.49
39636--39678
23
1.9
22
95
4
77
58
18
9
13
1.62
40016--40277
129
2.0
130
88
4
386
38
9
1
50
1.46

Tables:   1

The End!