Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001948.1 Corchorus olitorius cultivar O-4 contig01948, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 633

Length: 1055
ACGTcount: A:0.25, C:0.16, G:0.18, T:0.41


Found at i:871 original size:15 final size:16

Alignment explanation


    Indices: 838--877  Score: 64
    Period size: 15  Copynumber: 2.6  Consensus size: 16

        828 TTTGTTTGTT

                            
        838 TTGTTTTCTAGTATAA
          1 TTGTTTTCTAGTATAA

                        *   
        854 TTGTTTTCT-GTTTAA
          1 TTGTTTTCTAGTATAA

                     
        869 TTGTTTTCT
          1 TTGTTTTCT

        878 TTCAACCTCT


Statistics
Matches: 23,  Mismatches: 1, Indels: 1
        0.92            0.04        0.04

Matches are distributed among these distances:
  15   14  0.61
  16    9  0.39

ACGTcount: A:0.15, C:0.07, G:0.12, T:0.65


Consensus pattern (16 bp):   
TTGTTTTCTAGTATAA
Done.