Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019485.1 Corchorus olitorius cultivar O-4 contig19518, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  42631

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
2906--2961
21
2.8
19
82
10
76
37
10
19
32
1.86
27672--27770
48
2.1
48
96
0
180
25
18
45
11
1.82
27720--27838
63
1.9
63
92
0
202
24
19
46
10
1.80
27725--27855
63
2.1
63
82
5
158
29
19
41
9
1.84
29396--29427
14
2.3
14
100
0
64
34
12
0
53
1.39
31156--31287
64
2.0
65
95
1
239
35
25
14
24
1.93
31709--31774
22
3.0
22
95
0
123
37
27
13
21
1.91
33257--33355
47
2.1
47
92
3
164
37
13
24
25
1.91
33268--33368
47
2.1
48
88
3
150
34
14
21
28
1.93
34233--34314
41
2.0
41
95
0
146
40
10
13
35
1.80
34273--34337
32
2.0
32
85
5
87
40
13
12
33
1.82
34461--34486
1
26.0
1
100
0
52
0
0
0
100
0.00
34472--34541
30
2.4
29
85
2
95
11
4
18
65
1.40
34625--34658
18
1.9
17
88
5
50
55
29
2
11
1.50
37594--37628
13
2.7
13
90
0
61
22
17
0
60
1.37
39570--39697
44
2.9
44
84
0
148
35
11
16
35
1.85
39592--39695
22
4.7
22
80
9
122
36
9
16
37
1.81
42297--42613
22
14.3
22
72
9
198
41
10
16
31
1.81

Tables:   1

The End!