Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019487.1 Corchorus olitorius cultivar O-4 contig19520, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  23360

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3237--3304
31
2.2
31
84
2
84
32
16
4
47
1.66
3963--4005
21
2.0
21
90
0
68
39
4
27
27
1.76
3971--4040
33
2.1
33
94
0
122
30
5
31
32
1.81
7832--7922
47
2.0
47
89
6
143
37
0
3
59
1.14
8241--8383
48
2.9
49
96
3
261
39
13
5
41
1.68
11012--11054
6
7.5
6
82
10
54
81
16
2
0
0.79
13411--13505
47
2.0
47
100
0
190
41
4
14
40
1.66
13558--13690
13
9.3
13
72
23
99
42
0
15
42
1.47
13554--13812
45
5.9
45
70
22
169
42
1
14
41
1.55
13616--13849
117
2.0
117
97
0
441
42
2
12
41
1.58
13733--13807
13
5.3
13
72
22
62
41
0
16
42
1.47
13558--13807
58
4.3
57
80
10
310
42
1
14
41
1.56
15825--16129
78
4.0
78
93
3
537
33
17
14
34
1.90
17354--17413
30
2.0
30
96
0
111
26
25
3
45
1.69

Tables:   1

The End!