Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019489.1 Corchorus olitorius cultivar O-4 contig19522, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  33741

Tables:   1   

This is table  1  of  1  ( 14 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
160--1390
333
3.8
320
80
6
1339
33
13
15
36
1.87
8--1399
655
2.1
652
84
3
1760
33
13
16
37
1.87
1430--1506
26
3.0
26
96
0
145
24
19
14
41
1.89
1555--2141
323
1.8
322
82
3
734
34
13
14
36
1.86
2194--3329
321
3.6
316
80
8
1217
32
14
16
36
1.89
4322--4374
11
4.3
12
81
15
56
62
7
1
28
1.33
4322--4365
13
3.5
13
84
15
65
61
9
0
29
1.27
4322--4374
24
2.2
25
89
3
81
62
7
1
28
1.33
5598--5678
40
2.0
40
85
0
108
41
17
12
28
1.85
8151--8179
4
7.2
4
100
0
58
24
0
0
75
0.80
18676--18716
4
10.0
4
84
5
55
0
24
0
75
0.80
20749--20801
2
26.5
2
96
0
97
1
0
47
50
1.12
26774--26866
37
2.5
35
80
13
107
7
36
38
17
1.78
30467--30504
19
2.0
19
94
0
67
50
5
10
34
1.59

Tables:   1

The End!