Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01001949.1 Corchorus olitorius cultivar O-4 contig01949, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 791

Length: 1319
ACGTcount: A:0.32, C:0.21, G:0.23, T:0.24


Found at i:918 original size:22 final size:22

Alignment explanation


    Indices: 890--935  Score: 92
    Period size: 22  Copynumber: 2.1  Consensus size: 22

        880 TCGAAAAAGC

                                  
        890 AGTAGACACATTACATAAGTTG
          1 AGTAGACACATTACATAAGTTG

                                  
        912 AGTAGACACATTACATAAGTTG
          1 AGTAGACACATTACATAAGTTG

              
        934 AG
          1 AG

        936 AAGGTGCTTT


Statistics
Matches: 24,  Mismatches: 0, Indels: 0
        1.00            0.00        0.00

Matches are distributed among these distances:
  22   24  1.00

ACGTcount: A:0.41, C:0.13, G:0.20, T:0.26


Consensus pattern (22 bp):   
AGTAGACACATTACATAAGTTG
Done.