Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019494.1 Corchorus olitorius cultivar O-4 contig19527, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 7756
ACGTcount: A:0.35, C:0.19, G:0.20, T:0.26


Found at i:4323 original size:15 final size:16

Alignment explanation


    Indices: 4299--4338  Score: 55
    Period size: 15  Copynumber: 2.6  Consensus size: 16

       4289 AGAGGTTGAA

                 *          
       4299 AGAAAGCAATTAAAC-
          1 AGAAAACAATTAAACT

                        *   
       4314 AGAAAACAATTATACT
          1 AGAAAACAATTAAACT

                     
       4330 AGAAAACAA
          1 AGAAAACAA

       4339 AGCAAATTAA


Statistics
Matches: 22,  Mismatches: 2, Indels: 1
        0.88            0.08        0.04

Matches are distributed among these distances:
  15   13  0.59
  16    9  0.41

ACGTcount: A:0.62, C:0.12, G:0.10, T:0.15


Consensus pattern (16 bp):   
AGAAAACAATTAAACT

Found at i:5734 original size:19 final size:18

Alignment explanation


    Indices: 5701--5736  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

       5691 TTGAAATAGA

                              
       5701 TCTTCAAAAATCTTCAAG
          1 TCTTCAAAAATCTTCAAG

                     *        
       5719 TCTTCAAATTATCTTCAA
          1 TCTTCAAA-AATCTTCAA

       5737 ATGGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39


Consensus pattern (18 bp):   
TCTTCAAAAATCTTCAAG
Done.