Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019496.1 Corchorus olitorius cultivar O-4 contig19529, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 3414
ACGTcount: A:0.32, C:0.19, G:0.20, T:0.28


Found at i:461 original size:19 final size:18

Alignment explanation


    Indices: 428--463  Score: 54
    Period size: 18  Copynumber: 1.9  Consensus size: 18

        418 TTGAAATAGA

                              
        428 TCTTCAAAAATCTTCAAG
          1 TCTTCAAAAATCTTCAAG

                     *        
        446 TCTTCAAATTATCTTCAA
          1 TCTTCAAA-AATCTTCAA

        464 ATGGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    8  0.50
  19    8  0.50

ACGTcount: A:0.36, C:0.22, G:0.03, T:0.39


Consensus pattern (18 bp):   
TCTTCAAAAATCTTCAAG
Done.