genome.fa.s19499.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019499.1 Corchorus olitorius cultivar O-4 contig19532, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  114392

Tables:   1   

This is table  1  of  1  ( 50 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
2045--2084	19	2.2	19	86	8	57	35	20	0	45	1.51
6039--6094	25	2.2	26	81	12	64	30	8	17	42	1.80
6081--6533	149	3.0	150	84	5	543	30	15	18	36	1.91
6340--6475	47	3.1	47	61	28	118	27	13	19	38	1.90
6081--6533	75	5.9	77	84	8	525	30	15	18	36	1.91
7504--7617	11	10.8	11	69	9	67	50	0	5	44	1.24
15190--15247	24	2.4	24	88	0	89	22	12	41	24	1.87
15695--15745	24	2.1	25	85	3	68	70	5	5	17	1.28
18001--18039	2	19.5	2	100	0	78	51	0	0	48	1.00
22038--22073	18	2.0	18	100	0	72	66	0	16	16	1.25
22541--22730	78	2.5	75	85	9	267	34	18	14	32	1.91
32894--34149	440	2.9	434	82	4	1417	41	15	14	28	1.86
37553--37657	30	3.5	30	78	8	124	30	11	44	13	1.79
40268--40315	11	4.7	11	78	21	52	33	20	6	39	1.78
45086--45149	30	2.1	30	85	5	85	40	4	18	35	1.72
46824--46861	17	2.2	17	86	9	51	60	5	0	34	1.19
47169--47211	21	2.0	21	90	0	68	44	9	37	9	1.69
50723--51060	178	1.9	178	85	4	477	34	12	16	36	1.87
54696--54721	3	8.7	3	100	0	52	65	0	0	34	0.93
55974--56001	14	2.0	14	100	0	56	28	0	14	57	1.38
59014--59089	38	2.0	38	94	2	136	38	21	6	34	1.79
65027--65098	31	2.3	31	97	0	135	43	12	19	25	1.86
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
68384--68477	33	2.9	33	79	4	102	10	20	46	22	1.81
70895--70936	16	2.6	16	88	7	59	69	9	9	11	1.38
72322--72357	18	1.9	18	88	5	54	36	22	2	38	1.69
87700--87733	2	17.5	2	90	6	52	47	0	0	52	1.00
92673--92708	17	2.1	17	94	0	63	5	8	44	41	1.58
95478--95526	3	16.3	3	100	0	98	67	0	0	32	0.91
100603--100673	24	2.9	24	72	12	63	11	25	36	26	1.90
100937--101028	28	3.3	28	87	3	123	16	29	22	31	1.96
100957--101049	28	3.3	28	81	3	107	15	25	26	32	1.95
101220--101294	29	2.6	29	87	4	107	17	26	29	26	1.97
101298--101440	27	5.2	27	77	5	126	21	25	27	24	1.99
101322--101633	28	11.2	28	71	6	215	20	26	27	25	1.99
101298--101552	55	4.6	55	77	6	246	20	26	27	26	1.99
101763--101833	28	2.5	28	83	0	79	21	28	18	32	1.96
102561--102750	58	3.3	57	91	2	308	15	22	35	26	1.94
102787--102817	12	2.6	12	94	0	53	22	16	25	35	1.94
102872--102897	2	13.0	2	100	0	52	50	0	0	50	1.00
105903--106000	30	3.3	30	98	0	187	22	0	37	39	1.54
106126--106173	15	3.0	15	72	16	51	47	6	31	14	1.69
109458--109521	31	2.1	29	83	11	76	37	15	20	26	1.92
111601--111645	23	2.0	23	90	0	72	80	0	13	6	0.91
112042--112116	25	3.0	25	86	7	100	69	14	1	14	1.26
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
112072--112115	5	8.6	5	80	14	54	68	15	0	15	1.22
112029--112110	20	4.2	19	77	18	80	70	12	1	15	1.22
112707--112806	50	2.0	50	90	0	155	35	15	13	37	1.85
113260--113409	79	1.9	79	92	0	255	30	20	14	34	1.92
113482--113600	50	2.4	50	92	0	202	29	29	15	26	1.96
113628--113833	50	4.1	50	96	0	376	31	12	29	26	1.92

Tables:   1

The End!