Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019500.1 Corchorus olitorius cultivar O-4 contig19533, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 2804
ACGTcount: A:0.32, C:0.20, G:0.18, T:0.30


Found at i:536 original size:23 final size:23

Alignment explanation


    Indices: 510--556  Score: 85
    Period size: 23  Copynumber: 2.0  Consensus size: 23

        500 AAAAACAAAA

                                   
        510 AAACAAGTCGAAACAGAGCAATC
          1 AAACAAGTCGAAACAGAGCAATC

                         *         
        533 AAACAAGTCGAAATAGAGCAATC
          1 AAACAAGTCGAAACAGAGCAATC

             
        556 A
          1 A

        557 TAGGCTTGTC


Statistics
Matches: 23,  Mismatches: 1, Indels: 0
        0.96            0.04        0.00

Matches are distributed among these distances:
  23   23  1.00

ACGTcount: A:0.53, C:0.19, G:0.17, T:0.11


Consensus pattern (23 bp):   
AAACAAGTCGAAACAGAGCAATC
Done.