Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019502.1 Corchorus olitorius cultivar O-4 contig19535, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26289

Tables:   1   

This is table  1  of  1  ( 13 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7--182
43
4.2
42
85
5
221
21
10
26
41
1.85
16--181
84
2.0
84
92
0
278
22
10
26
40
1.85
4302--4332
16
1.9
16
100
0
62
32
3
38
25
1.72
6199--6272
27
2.7
28
85
2
105
40
25
14
18
1.89
14648--14687
2
20.5
2
89
5
64
50
0
2
47
1.14
14796--15208
43
9.8
42
84
5
530
20
11
25
41
1.86
14796--15208
84
4.9
84
93
0
693
20
11
25
41
1.86
15471--15520
3
16.7
3
95
0
91
2
30
0
68
1.01
17810--17843
17
1.9
18
88
5
52
32
8
2
55
1.45
18225--18420
29
6.8
29
78
6
184
17
16
22
42
1.88
18256--18329
9
7.7
9
69
19
51
13
14
22
48
1.79
18225--18389
59
2.8
58
80
1
186
16
16
23
43
1.88
26043--26076
16
2.1
16
88
0
50
41
41
11
5
1.66

Tables:   1

The End!