Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09
Sequence: AWUE01019503.1 Corchorus olitorius cultivar O-4 contig19536, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000
Length: 40304
ACGTcount: A:0.32, C:0.17, G:0.17, T:0.33
Found at i:338 original size:54 final size:51
Alignment explanation
Indices: 227--339 Score: 122
Period size: 54 Copynumber: 2.2 Consensus size: 51
217 TATTATAAAC
* * *
227 TAAATT-TT-TTTATTTAATAAAATCTACATTGTTACAATATTACATTTTT
1 TAAATTATTATTTATTTAATAAAATATACATTGTTACAATATTACATATTA
* * * *
276 TAAATTATTATTTATTTAATAAAATTTATATTATTGTTATAATTTTACCTATTA
1 TAAATTATTATTTATTTAATAAAA--TATA-CATTGTTACAATATTACATATTA
330 TAAATTATTA
1 TAAATTATTA
340 CGAAATTTAC
Statistics
Matches: 52, Mismatches: 7, Indels: 5
0.81 0.11 0.08
Matches are distributed among these distances:
49 6 0.12
50 2 0.04
51 14 0.27
53 3 0.06
54 27 0.52
ACGTcount: A:0.39, C:0.05, G:0.02, T:0.54
Consensus pattern (51 bp):
TAAATTATTATTTATTTAATAAAATATACATTGTTACAATATTACATATTA
Found at i:438 original size:14 final size:14
Alignment explanation
Indices: 419--445 Score: 54
Period size: 14 Copynumber: 1.9 Consensus size: 14
409 TGAATAATTT
419 ATAATAAATTTATA
1 ATAATAAATTTATA
433 ATAATAAATTTAT
1 ATAATAAATTTAT
446 TTTTTTACAT
Statistics
Matches: 13, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
14 13 1.00
ACGTcount: A:0.56, C:0.00, G:0.00, T:0.44
Consensus pattern (14 bp):
ATAATAAATTTATA
Found at i:2915 original size:24 final size:22
Alignment explanation
Indices: 2836--2915 Score: 63
Period size: 24 Copynumber: 3.4 Consensus size: 22
2826 GCTATTTTAC
*
2836 TTTTTTCTTTACCAAATTTCACT
1 TTTTTTTTTTACCAAATTTCA-T
* *
2859 TTTCTCTTTTTACCATATTACTC-T
1 TTT-TTTTTTTACCAAATT--TCAT
2883 TTTTGTTTTAATTACCAAATTTCAT
1 TTTT-TTTT--TTACCAAATTTCAT
2908 TTTTTTTT
1 TTTTTTTT
2916 CTCTTTTTAC
Statistics
Matches: 45, Mismatches: 5, Indels: 13
0.71 0.08 0.21
Matches are distributed among these distances:
23 4 0.09
24 25 0.56
25 5 0.11
26 11 0.24
ACGTcount: A:0.20, C:0.17, G:0.01, T:0.61
Consensus pattern (22 bp):
TTTTTTTTTTACCAAATTTCAT
Found at i:3021 original size:21 final size:24
Alignment explanation
Indices: 2997--3090 Score: 70
Period size: 24 Copynumber: 3.9 Consensus size: 24
2987 TCATTTTGCC
2997 ATTT-ACTTTT-TC-TTTTACCAA
1 ATTTCACTTTTCTCTTTTTACCAA
*
3018 ATTTCACTTTTCTCTTTTTACCAT
1 ATTTCACTTTTCTCTTTTTACCAA
* * *
3042 ATTACTCTTTT-TGTTTTAATTACCAA
1 ATTTCACTTTTCT-CTTT--TTACCAA
*
3068 ATTTCATTTTTTTCTCTTTTTAC
1 ATTTCA--CTTTTCTCTTTTTAC
3091 TTTGATTACC
Statistics
Matches: 55, Mismatches: 9, Indels: 13
0.71 0.12 0.17
Matches are distributed among these distances:
21 4 0.07
22 6 0.11
23 3 0.05
24 20 0.36
26 14 0.25
28 7 0.13
29 1 0.02
ACGTcount: A:0.20, C:0.19, G:0.01, T:0.60
Consensus pattern (24 bp):
ATTTCACTTTTCTCTTTTTACCAA
Found at i:3244 original size:38 final size:37
Alignment explanation
Indices: 3182--3413 Score: 180
Period size: 38 Copynumber: 6.5 Consensus size: 37
3172 TCTTTACTCA
* *
3182 AATTACCAGATTCCATTTTA--CTTTTTTTTTATTTT
1 AATTACCAAATTCCATTTTACTCTTTTTTTTTACTTT
* ***
3217 AATTACCAAATCCCATTTTTACTCTTTTTAAATACTTT
1 AATTACCAAATTCCA-TTTTACTCTTTTTTTTTACTTT
* *
3255 AATTATCAAGTTCCATTTTACTCTTTTTTTTTACTTT
1 AATTACCAAATTCCATTTTACTCTTTTTTTTTACTTT
* * * ***
3292 AATTACCAAGTTTCATTTTTAATCTTTTTAAATACTTT
1 AATTACCAAATTCCA-TTTTACTCTTTTTTTTTACTTT
* * * *
3330 AATTATCAATTTCCATTTTACTC----CTTTTACGTT
1 AATTACCAAATTCCATTTTACTCTTTTTTTTTACTTT
* *
3363 AATTTCCAAATTCCATATTACTC-----TTTTACTTT
1 AATTACCAAATTCCATTTTACTCTTTTTTTTTACTTT
*
3395 AATTACCAAATTTCATTTT
1 AATTACCAAATTCCATTTT
3414 TTCCCAAATA
Statistics
Matches: 158, Mismatches: 35, Indels: 11
0.77 0.17 0.05
Matches are distributed among these distances:
32 24 0.15
33 24 0.15
35 13 0.08
36 5 0.03
37 39 0.25
38 53 0.34
ACGTcount: A:0.28, C:0.18, G:0.02, T:0.53
Consensus pattern (37 bp):
AATTACCAAATTCCATTTTACTCTTTTTTTTTACTTT
Found at i:3274 original size:37 final size:37
Alignment explanation
Indices: 3182--3358 Score: 180
Period size: 37 Copynumber: 4.8 Consensus size: 37
3172 TCTTTACTCA
** *
3182 AATTACC-AGATTCCATTTTACT-TTTTT-TTTATTTT
1 AATTACCAAG-TTCCATTTTACTCTTTTTAAATACTTT
* *
3217 AATTACCAAATCCCATTTTTACTCTTTTTAAATACTTT
1 AATTACCAAGTTCCA-TTTTACTCTTTTTAAATACTTT
* ***
3255 AATTATCAAGTTCCATTTTACTCTTTTTTTTTACTTT
1 AATTACCAAGTTCCATTTTACTCTTTTTAAATACTTT
* *
3292 AATTACCAAGTTTCATTTTTAATCTTTTTAAATACTTT
1 AATTACCAAGTTCCA-TTTTACTCTTTTTAAATACTTT
* * *
3330 AATTATCAATTTCCATTTTACTCCTTTTA
1 AATTACCAAGTTCCATTTTACTCTTTTTA
3359 CGTTAATTTC
Statistics
Matches: 115, Mismatches: 22, Indels: 8
0.79 0.15 0.06
Matches are distributed among these distances:
35 11 0.10
36 8 0.07
37 49 0.43
38 47 0.41
ACGTcount: A:0.27, C:0.17, G:0.02, T:0.54
Consensus pattern (37 bp):
AATTACCAAGTTCCATTTTACTCTTTTTAAATACTTT
Found at i:3296 original size:75 final size:75
Alignment explanation
Indices: 3192--3357 Score: 255
Period size: 75 Copynumber: 2.2 Consensus size: 75
3182 AATTACCAGA
* *
3192 TTCCATTTTA--CTTTTTTTTTATTTTAATTACCAAATCCCATTTTTACTCTTTTTAAATACTTT
1 TTCCATTTTACTCTTTTTTTTTACTTTAATTACCAAATCCCATTTTTAATCTTTTTAAATACTTT
3255 AATTATCAAG
66 AATTATCAAG
* **
3265 TTCCATTTTACTCTTTTTTTTTACTTTAATTACCAAGTTTCATTTTTAATCTTTTTAAATACTTT
1 TTCCATTTTACTCTTTTTTTTTACTTTAATTACCAAATCCCATTTTTAATCTTTTTAAATACTTT
*
3330 AATTATCAAT
66 AATTATCAAG
*
3340 TTCCATTTTACTCCTTTT
1 TTCCATTTTACTCTTTTT
3358 ACGTTAATTT
Statistics
Matches: 84, Mismatches: 7, Indels: 2
0.90 0.08 0.02
Matches are distributed among these distances:
73 10 0.12
75 74 0.88
ACGTcount: A:0.25, C:0.17, G:0.01, T:0.57
Consensus pattern (75 bp):
TTCCATTTTACTCTTTTTTTTTACTTTAATTACCAAATCCCATTTTTAATCTTTTTAAATACTTT
AATTATCAAG
Found at i:3377 original size:33 final size:32
Alignment explanation
Indices: 3328--3413 Score: 109
Period size: 32 Copynumber: 2.7 Consensus size: 32
3318 TTTAAATACT
* *
3328 TTAATTATCAATTTCCATTTTACTCCTTTTACG
1 TTAATTACCAAATTCCATTTTACT-CTTTTACG
* * *
3361 TTAATTTCCAAATTCCATATTACTCTTTTACT
1 TTAATTACCAAATTCCATTTTACTCTTTTACG
*
3393 TTAATTACCAAATTTCATTTT
1 TTAATTACCAAATTCCATTTT
3414 TTCCCAAATA
Statistics
Matches: 45, Mismatches: 8, Indels: 1
0.83 0.15 0.02
Matches are distributed among these distances:
32 25 0.56
33 20 0.44
ACGTcount: A:0.28, C:0.20, G:0.01, T:0.51
Consensus pattern (32 bp):
TTAATTACCAAATTCCATTTTACTCTTTTACG
Found at i:3397 original size:32 final size:33
Alignment explanation
Indices: 3324--3406 Score: 107
Period size: 33 Copynumber: 2.5 Consensus size: 33
3314 TCTTTTTAAA
* *
3324 TACTTTAATTAT-CAATTTCCATTTTACTCCTTT
1 TACTTTAATT-TCCAAATTCCATATTACTCCTTT
*
3357 TACGTTAATTTCCAAATTCCATATTACT-CTTT
1 TACTTTAATTTCCAAATTCCATATTACTCCTTT
*
3389 TACTTTAATTACCAAATT
1 TACTTTAATTTCCAAATT
3407 TCATTTTTTC
Statistics
Matches: 44, Mismatches: 5, Indels: 3
0.85 0.10 0.06
Matches are distributed among these distances:
32 21 0.48
33 23 0.52
ACGTcount: A:0.29, C:0.20, G:0.01, T:0.49
Consensus pattern (33 bp):
TACTTTAATTTCCAAATTCCATATTACTCCTTT
Found at i:19717 original size:16 final size:17
Alignment explanation
Indices: 19685--19717 Score: 50
Period size: 17 Copynumber: 2.0 Consensus size: 17
19675 GATCAAACGA
19685 AATAAAATAAAAGATAG
1 AATAAAATAAAAGATAG
*
19702 AATAAATTAAAA-ATAG
1 AATAAAATAAAAGATAG
19718 TAATTAAAGT
Statistics
Matches: 15, Mismatches: 1, Indels: 1
0.88 0.06 0.06
Matches are distributed among these distances:
16 4 0.27
17 11 0.73
ACGTcount: A:0.70, C:0.00, G:0.09, T:0.21
Consensus pattern (17 bp):
AATAAAATAAAAGATAG
Found at i:22469 original size:29 final size:29
Alignment explanation
Indices: 22427--22488 Score: 97
Period size: 29 Copynumber: 2.1 Consensus size: 29
22417 AATGGATGTT
* *
22427 TTAATGTTGTTTTTGATATATATACGATA
1 TTAATGTGGGTTTTGATATATATACGATA
*
22456 TTAATGTGGGTTTTGATGTATATACGATA
1 TTAATGTGGGTTTTGATATATATACGATA
22485 TTAA
1 TTAA
22489 CGTACGGAGT
Statistics
Matches: 30, Mismatches: 3, Indels: 0
0.91 0.09 0.00
Matches are distributed among these distances:
29 30 1.00
ACGTcount: A:0.31, C:0.03, G:0.18, T:0.48
Consensus pattern (29 bp):
TTAATGTGGGTTTTGATATATATACGATA
Found at i:23991 original size:23 final size:23
Alignment explanation
Indices: 23962--24008 Score: 67
Period size: 23 Copynumber: 2.0 Consensus size: 23
23952 GATCGAACAG
23962 GGGGATCAGAAAAACACAAACGA
1 GGGGATCAGAAAAACACAAACGA
***
23985 GGGGATCAGGGGAACACAAACGA
1 GGGGATCAGAAAAACACAAACGA
24008 G
1 G
24009 AGGAAGAGGG
Statistics
Matches: 21, Mismatches: 3, Indels: 0
0.88 0.12 0.00
Matches are distributed among these distances:
23 21 1.00
ACGTcount: A:0.45, C:0.17, G:0.34, T:0.04
Consensus pattern (23 bp):
GGGGATCAGAAAAACACAAACGA
Found at i:24018 original size:23 final size:23
Alignment explanation
Indices: 23974--24018 Score: 63
Period size: 23 Copynumber: 2.0 Consensus size: 23
23964 GGATCAGAAA
* *
23974 AACACAAACGAGGGGATCAGGGG
1 AACACAAACGAGAGGAACAGGGG
*
23997 AACACAAACGAGAGGAAGAGGG
1 AACACAAACGAGAGGAACAGGG
24019 ATTGGGCTGC
Statistics
Matches: 19, Mismatches: 3, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
23 19 1.00
ACGTcount: A:0.44, C:0.16, G:0.38, T:0.02
Consensus pattern (23 bp):
AACACAAACGAGAGGAACAGGGG
Found at i:29203 original size:75 final size:75
Alignment explanation
Indices: 28875--29248 Score: 457
Period size: 75 Copynumber: 5.0 Consensus size: 75
28865 TTTAGCCTAT
* *
28875 ATACTTTGAAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTC
1 ATACCTTG-AAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTC
* *
28940 CAAATTCCTGA
65 CAAATTACTAA
* * * *
28951 ATATCTTGAAGAGACGTTATAAGTAGTTATAACCGCCCAAATATGA--TTGTGCATGTAACCTCC
1 ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTCC
**
29014 AAATTACTGT
66 AAATTACTAA
* * * * *
29024 ATACCTTAAAGAGATGTTGCAAGCATTTGTAACTGCCCAAATATGATGTTGTGCATGTAACCTCC
1 ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTCC
29089 -AATTACTAA
66 AAATTACTAA
* * *
29098 ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAACTATGATGTTGTGCATCTAACCACC
1 ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTCC
*
29163 AAATTATTAA
66 AAATTACTAA
* * * * * * *** *
29173 ATACCTTGAATAGACGTTATAAGTACTTGTAACGGTCCAAATATAATGCCATGCATGTACCCTCC
1 ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTCC
29238 AAATTACTAA
66 AAATTACTAA
29248 A
1 A
29249 GATTTGTATC
Statistics
Matches: 253, Mismatches: 42, Indels: 7
0.84 0.14 0.02
Matches are distributed among these distances:
73 62 0.25
74 64 0.25
75 121 0.48
76 6 0.02
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (75 bp):
ATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAAATATGATGTTGTGCATGTAACCTCC
AAATTACTAA
Found at i:29213 original size:149 final size:148
Alignment explanation
Indices: 28883--29248 Score: 464
Period size: 149 Copynumber: 2.5 Consensus size: 148
28873 ATATACTTTG
*
28883 AAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTCCAAATTCC
1 AAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTCCAAATTAC
* * * * *
28948 TGAATATCTTGAAGAGACGTTATAAGTAGTTATAACCGCCCAAATATGATTGTGCATGTAACCTC
66 TAAATACCTTGAAGAGACGTTACAAGTAGTTATAACCGCCCAAATATGATTGTGCATCTAACCAC
**
29013 CAAATTACTGTATACCTT
131 CAAATTACTAAATACCTT
* * * *
29031 AAAGAGATGTTGCAAGCATTTGTAACTGCCCAAATATGATGTTGTGCATGTAACCTCC-AATTAC
1 AAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTCCAAATTAC
* * *
29095 TAAATACCTTGAAGAGACGTTACAAGTATTTGTAACCGCCCAACTATGATGTTGTGCATCTAACC
66 TAAATACCTTGAAGAGACGTTACAAGTAGTTATAACCGCCCAAATATGA--TTGTGCATCTAACC
*
29160 ACCAAATTATTAAATACCTT
129 ACCAAATTACTAAATACCTT
* * * * * * * *** *
29180 GAATAGACGTTATAAGTACTTGTAACGGTCCAAATATAATGCCATGCATGTACCCTCCAAATTAC
1 AAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTCCAAATTAC
29245 TAAA
66 TAAA
29249 GATTTGTATC
Statistics
Matches: 185, Mismatches: 30, Indels: 4
0.84 0.14 0.02
Matches are distributed among these distances:
147 48 0.26
148 54 0.29
149 73 0.39
150 10 0.05
ACGTcount: A:0.35, C:0.20, G:0.16, T:0.30
Consensus pattern (148 bp):
AAAGAGACGTTACAAGTATTTGTAACAGCCCAAATATGATGTTGTGCATGTAACCTCCAAATTAC
TAAATACCTTGAAGAGACGTTACAAGTAGTTATAACCGCCCAAATATGATTGTGCATCTAACCAC
CAAATTACTAAATACCTT
Found at i:31068 original size:32 final size:32
Alignment explanation
Indices: 31001--31074 Score: 94
Period size: 32 Copynumber: 2.3 Consensus size: 32
30991 TGTTATTCGG
* ** * *
31001 GTTTCGAATCATTTGGATCTCAGGTCATTCGA
1 GTTTCGAGTCATTTGGATCTCACATCAATCAA
*
31033 GTTTCGAGTCATTTGGGTCTCACATCAATCAA
1 GTTTCGAGTCATTTGGATCTCACATCAATCAA
31065 GTTTCGAGTC
1 GTTTCGAGTC
31075 TCAAGTCATT
Statistics
Matches: 36, Mismatches: 6, Indels: 0
0.86 0.14 0.00
Matches are distributed among these distances:
32 36 1.00
ACGTcount: A:0.22, C:0.20, G:0.22, T:0.36
Consensus pattern (32 bp):
GTTTCGAGTCATTTGGATCTCACATCAATCAA
Found at i:32929 original size:2 final size:2
Alignment explanation
Indices: 32922--32948 Score: 54
Period size: 2 Copynumber: 13.5 Consensus size: 2
32912 AGGACTAATT
32922 TA TA TA TA TA TA TA TA TA TA TA TA TA T
1 TA TA TA TA TA TA TA TA TA TA TA TA TA T
32949 GCGTGTCGTG
Statistics
Matches: 25, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
2 25 1.00
ACGTcount: A:0.48, C:0.00, G:0.00, T:0.52
Consensus pattern (2 bp):
TA
Found at i:38249 original size:9 final size:10
Alignment explanation
Indices: 38212--38263 Score: 52
Period size: 10 Copynumber: 5.0 Consensus size: 10
38202 TCCCATCAGC
38212 GAAAGAAAAAA
1 GAAA-AAAAAA
**
38223 G-AAAAGCAA
1 GAAAAAAAAA
38232 GCAAAAAAAAA
1 G-AAAAAAAAA
38243 GAAAAAAAAA
1 GAAAAAAAAA
38253 GAAAAAGAAAA
1 GAAAAA-AAAA
38264 TGTGAAAGAA
Statistics
Matches: 34, Mismatches: 4, Indels: 6
0.77 0.09 0.14
Matches are distributed among these distances:
9 5 0.15
10 17 0.50
11 12 0.35
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (10 bp):
GAAAAAAAAA
Found at i:38257 original size:16 final size:16
Alignment explanation
Indices: 38212--38263 Score: 54
Period size: 15 Copynumber: 3.3 Consensus size: 16
38202 TCCCATCAGC
38212 GAAAGAAAAAAG-AAAA
1 GAAA-AAAAAAGAAAAA
* **
38228 GCAAGCAAAA-AAAAA
1 GAAAAAAAAAGAAAAA
38243 GAAAAAAAAAGAAAAA
1 GAAAAAAAAAGAAAAA
38259 GAAAA
1 GAAAA
38264 TGTGAAAGAA
Statistics
Matches: 28, Mismatches: 6, Indels: 4
0.74 0.16 0.11
Matches are distributed among these distances:
15 15 0.54
16 13 0.46
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (16 bp):
GAAAAAAAAAGAAAAA
Found at i:38257 original size:20 final size:19
Alignment explanation
Indices: 38212--38263 Score: 50
Period size: 21 Copynumber: 2.5 Consensus size: 19
38202 TCCCATCAGC
**
38212 GAAAGAAAAAAGAAAAGCAA
1 GAAA-AAAAAAGAAAAAAAA
38232 GCAAAAAAAAAGAAAAAAAAA
1 G-AAAAAAAAAG-AAAAAAAA
38253 GAAAAAGAAAA
1 GAAAAA-AAAA
38264 TGTGAAAGAA
Statistics
Matches: 27, Mismatches: 2, Indels: 5
0.79 0.06 0.15
Matches are distributed among these distances:
20 13 0.48
21 14 0.52
ACGTcount: A:0.81, C:0.04, G:0.15, T:0.00
Consensus pattern (19 bp):
GAAAAAAAAAGAAAAAAAA
Found at i:39121 original size:30 final size:30
Alignment explanation
Indices: 39087--39146 Score: 84
Period size: 30 Copynumber: 2.0 Consensus size: 30
39077 TACTATTTTT
*
39087 ATTTTAGCAGCCCATTCCTTTACTTGGTTC
1 ATTTTAGAAGCCCATTCCTTTACTTGGTTC
* * *
39117 ATTTTAGAAGCTCATTTCTTTGCTTGGTTC
1 ATTTTAGAAGCCCATTCCTTTACTTGGTTC
39147 GAAGCTCATT
Statistics
Matches: 26, Mismatches: 4, Indels: 0
0.87 0.13 0.00
Matches are distributed among these distances:
30 26 1.00
ACGTcount: A:0.17, C:0.22, G:0.15, T:0.47
Consensus pattern (30 bp):
ATTTTAGAAGCCCATTCCTTTACTTGGTTC
Found at i:39155 original size:24 final size:24
Alignment explanation
Indices: 39123--39168 Score: 92
Period size: 24 Copynumber: 1.9 Consensus size: 24
39113 GTTCATTTTA
39123 GAAGCTCATTTCTTTGCTTGGTTC
1 GAAGCTCATTTCTTTGCTTGGTTC
39147 GAAGCTCATTTCTTTGCTTGGT
1 GAAGCTCATTTCTTTGCTTGGT
39169 CTTTGGTCAT
Statistics
Matches: 22, Mismatches: 0, Indels: 0
1.00 0.00 0.00
Matches are distributed among these distances:
24 22 1.00
ACGTcount: A:0.13, C:0.20, G:0.22, T:0.46
Consensus pattern (24 bp):
GAAGCTCATTTCTTTGCTTGGTTC
Done.