Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019504.1 Corchorus olitorius cultivar O-4 contig19537, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  26712

Tables:   1   

This is table  1  of  1  ( 10 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
3963--4107
54
2.7
54
87
1
191
31
15
19
34
1.92
4090--4893
35
22.5
34
84
10
891
26
13
17
42
1.86
4090--4903
70
11.4
71
85
6
1004
26
13
17
42
1.86
4093--4903
283
2.8
281
88
5
1171
26
13
17
42
1.86
4704--4854
80
1.9
80
88
2
232
25
11
17
45
1.81
4744--4840
45
2.2
44
78
9
106
25
9
18
46
1.79
4676--4896
115
1.9
114
93
0
379
25
11
17
44
1.83
14679--14738
33
1.9
30
90
10
93
66
3
0
30
1.07
14688--14747
17
3.6
17
75
20
72
60
5
0
35
1.19
18274--18375
51
2.0
50
83
9
127
21
22
13
42
1.88

Tables:   1

The End!