Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019507.1 Corchorus olitorius cultivar O-4 contig19540, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  93576

Tables:   1   

This is table  1  of  1  ( 33 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1646--1692
2
23.5
2
91
0
76
48
2
2
46
1.25
9334--9405
33
2.2
33
87
2
101
18
15
40
26
1.90
14396--14431
3
12.0
3
100
0
72
33
0
0
66
0.92
15462--15512
24
2.1
25
88
3
77
72
3
5
17
1.20
20485--20530
21
2.2
21
88
7
67
63
8
2
26
1.35
29489--29530
9
4.6
9
82
5
57
7
11
0
80
0.88
35665--36145
30
16.0
30
88
3
691
48
19
13
18
1.81
36112--36305
39
5.0
39
82
5
225
46
15
17
20
1.84
36484--36556
36
2.0
36
86
0
101
32
17
16
32
1.93
36763--37369
169
3.6
169
92
1
950
35
15
19
29
1.93
37422--37592
69
2.5
69
92
0
279
30
14
28
27
1.95
38878--38914
15
2.4
16
86
13
51
5
13
0
81
0.86
39210--39278
17
4.1
17
83
12
90
7
0
10
82
0.84
39221--39278
8
7.2
8
80
16
59
5
0
8
86
0.71
39216--39282
15
4.5
15
85
10
93
7
0
10
82
0.85
43552--43593
16
2.6
18
85
14
56
9
19
0
71
1.13
50033--50084
27
1.9
27
88
0
77
44
26
15
13
1.84
52026--52061
19
1.9
18
88
5
54
27
22
8
41
1.82
65323--65425
22
4.7
22
75
8
86
42
12
7
36
1.72
66855--66884
8
3.8
8
90
0
51
0
0
16
83
0.65
66854--66884
16
1.9
16
100
0
62
0
0
16
83
0.64
68377--68405
3
9.7
3
100
0
58
34
0
0
65
0.93
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
72933--72983
14
3.7
14
79
10
52
62
3
7
25
1.40
80231--80490
107
2.5
104
91
4
405
41
9
8
40
1.69
80528--80554
2
13.5
2
100
0
54
51
0
48
0
1.00
81901--81962
22
2.8
22
69
13
56
48
6
4
40
1.50
83058--83115
18
3.3
18
72
13
57
65
0
3
31
1.09
83048--83115
35
1.9
35
84
0
91
66
0
4
29
1.11
83861--83897
2
19.0
2
94
5
67
48
0
0
51
1.00
84357--84546
106
1.8
105
91
3
319
28
18
7
44
1.77
86514--86571
26
2.2
26
100
0
116
12
53
8
25
1.66
87750--87803
20
2.7
20
100
0
108
27
9
22
40
1.84
90488--90536
21
2.3
21
96
0
89
22
20
18
38
1.93

Tables:   1

The End!