Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019508.1 Corchorus olitorius cultivar O-4 contig19541, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  75024

Tables:   1   

This is table  1  of  1  ( 30 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
319--351
2
17.0
2
87
6
50
51
0
0
48
1.00
1262--1328
31
2.2
31
97
0
125
49
7
11
31
1.67
2358--2387
14
2.1
14
93
0
51
46
16
20
16
1.84
2804--2916
33
3.4
33
95
0
190
10
29
39
20
1.86
2976--3019
8
5.9
8
84
12
58
65
0
0
34
0.93
4554--4622
29
2.7
24
74
21
77
36
5
10
47
1.61
5617--6096
257
1.9
256
87
3
714
23
21
24
30
1.99
6597--6676
40
2.0
41
92
2
135
36
20
11
32
1.88
8566--8628
25
2.6
25
94
2
110
9
11
9
69
1.36
15281--15338
1
58.0
1
78
0
62
89
10
0
0
0.48
15284--15339
15
3.6
15
82
17
78
87
12
0
0
0.54
15282--15338
16
3.5
17
85
9
91
89
10
0
0
0.49
15281--15339
26
2.3
25
86
11
84
88
11
0
0
0.53
27562--27623
25
2.6
24
87
5
81
59
4
6
29
1.43
28721--28817
42
2.3
41
89
1
140
35
17
13
34
1.89
32175--32222
25
1.9
25
100
0
96
58
0
16
25
1.38
36870--36910
20
2.0
20
85
4
55
51
14
7
26
1.69
45232--45271
20
2.0
20
85
0
53
35
7
7
50
1.59
48031--48070
21
1.9
21
89
0
62
37
15
10
37
1.80
50048--50203
77
2.0
77
100
0
312
39
5
14
41
1.67
51368--51473
44
2.4
45
81
7
110
37
15
13
33
1.86
51409--51770
22
16.8
22
69
15
118
38
14
10
36
1.81
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
51828--51940
22
5.1
21
70
14
68
36
16
9
37
1.82
51837--51940
44
2.4
44
82
6
122
35
16
9
38
1.81
51827--52180
66
5.2
65
71
17
211
36
17
9
36
1.82
51872--52018
78
1.9
78
81
5
181
36
16
7
40
1.77
51958--52180
22
10.0
22
71
13
127
37
17
8
35
1.82
71499--71562
31
2.0
32
84
3
85
29
21
15
32
1.95
72300--72562
131
2.0
129
89
2
402
38
10
2
47
1.52
72322--72581
129
2.0
130
84
3
337
39
10
2
47
1.52

Tables:   1

The End!