Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019509.1 Corchorus olitorius cultivar O-4 contig19542, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  24112

Tables:   1   

This is table  1  of  1  ( 19 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
259--283
12
2.1
12
100
0
50
64
8
0
28
1.22
609--639
15
2.1
15
94
5
55
64
0
12
22
1.27
3707--3743
18
2.1
18
100
0
74
13
37
27
21
1.91
3707--3764
18
3.2
18
85
4
64
10
41
25
22
1.85
3713--3766
18
3.0
18
83
5
65
7
44
25
22
1.79
10610--10680
31
2.3
31
82
0
88
29
21
16
32
1.95
12187--12215
14
2.0
15
93
6
51
55
20
0
24
1.44
12222--13502
427
3.0
427
94
0
2240
32
19
22
26
1.97
19973--20337
21
17.8
21
71
14
212
53
4
22
19
1.63
20182--20323
22
6.7
22
77
12
154
52
4
21
21
1.65
20284--20338
28
2.0
28
100
0
110
50
3
23
21
1.64
20013--20343
7
47.6
7
63
18
59
52
4
22
19
1.64
20382--20450
25
2.7
25
86
4
84
56
1
21
20
1.50
20406--20458
25
2.1
25
100
0
106
52
3
18
24
1.62
20503--20561
27
2.2
28
84
9
86
54
3
22
20
1.59
20406--20615
115
1.8
114
80
13
250
56
2
19
20
1.54
20613--20747
28
4.6
28
68
21
73
57
3
18
20
1.55
20681--20746
26
2.4
27
92
5
107
59
4
18
18
1.55
20681--20754
26
2.8
26
87
6
78
59
5
16
18
1.55

Tables:   1

The End!