Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019514.1 Corchorus olitorius cultivar O-4 contig19547, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 10877
ACGTcount: A:0.31, C:0.20, G:0.17, T:0.32


Found at i:488 original size:19 final size:18

Alignment explanation


    Indices: 455--490  Score: 54
    Period size: 19  Copynumber: 1.9  Consensus size: 18

        445 TTGAAATTAT

                    *         
        455 TCTTCAATGGTCTTCAAA
          1 TCTTCAATAGTCTTCAAA

                              
        473 TCTTCAAATAGTCTTCAA
          1 TCTTC-AATAGTCTTCAA

        491 TAAGTCTTCA


Statistics
Matches: 16,  Mismatches: 1, Indels: 1
        0.89            0.06        0.06

Matches are distributed among these distances:
  18    5  0.31
  19   11  0.69

ACGTcount: A:0.31, C:0.22, G:0.08, T:0.39


Consensus pattern (18 bp):   
TCTTCAATAGTCTTCAAA
Done.