Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019517.1 Corchorus olitorius cultivar O-4 contig19550, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  45229

Tables:   1   

This is table  1  of  1  ( 42 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
7125--7200
39
1.9
39
91
0
125
36
11
21
30
1.89
18179--18235
13
4.4
13
73
6
53
73
0
24
1
0.92
20944--21224
106
2.7
106
91
3
451
41
8
7
41
1.64
20944--21258
106
3.0
102
85
10
399
42
9
6
41
1.64
24665--24690
2
13.0
2
100
0
52
50
0
0
50
1.00
25878--25933
23
2.7
20
82
17
62
28
21
25
25
1.99
33193--33570
68
5.6
68
84
5
414
22
20
16
40
1.91
33195--33646
135
3.4
133
80
9
375
23
20
15
40
1.91
33538--33698
66
2.4
65
81
10
159
26
22
14
36
1.92
38290--38323
16
2.2
15
89
5
50
55
8
5
29
1.54
38305--38336
12
2.4
14
90
10
50
50
9
6
34
1.60
38634--38686
1
53.0
1
76
0
52
88
1
9
0
0.58
38641--38686
14
3.4
13
85
8
65
89
0
10
0
0.50
38641--38686
13
3.3
14
87
6
67
89
0
10
0
0.50
38633--38686
28
1.9
28
88
7
83
87
1
11
0
0.63
39996--40323
8
43.1
8
67
22
65
28
20
3
46
1.68
40122--40323
22
9.3
22
80
10
195
30
18
2
48
1.63
40127--40566
14
30.2
13
68
23
103
30
20
3
45
1.69
40127--40334
36
5.8
36
70
20
98
30
19
2
47
1.64
40122--40566
44
10.5
44
75
16
302
30
20
3
45
1.68
40139--40490
22
16.0
22
72
16
147
30
21
3
44
1.69
40157--40341
36
5.1
36
71
18
102
30
20
2
45
1.65
Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
40397--40567
8
23.3
7
68
21
68
29
19
4
45
1.71
40405--40555
58
2.6
57
81
6
196
31
20
4
43
1.72
40485--40563
22
3.6
22
81
6
97
31
20
3
44
1.69
40483--40887
44
9.2
44
68
19
172
29
21
6
42
1.77
40494--40592
22
4.5
22
77
7
94
31
19
5
44
1.72
40441--40630
58
3.3
59
82
5
174
29
22
4
43
1.73
40527--40648
58
2.1
58
84
0
154
28
22
5
43
1.76
40614--40667
22
2.5
22
81
0
63
25
16
11
46
1.80
40381--40648
102
2.6
102
95
0
473
29
22
4
43
1.74
40661--40697
8
4.9
8
83
12
51
29
21
0
48
1.50
40669--40707
14
2.8
14
92
0
60
25
25
0
48
1.51
40733--40816
35
2.4
36
86
6
118
35
20
7
36
1.80
40791--40842
14
3.9
14
75
10
54
32
19
7
40
1.80
40804--40888
8
10.9
8
71
25
58
28
20
5
45
1.74
40791--40887
22
4.2
22
80
14
115
29
20
6
43
1.76
40793--40844
26
2.0
26
88
7
79
32
17
9
40
1.82
40860--40888
14
2.1
14
100
0
58
27
20
0
51
1.47
40926--40990
21
2.8
24
66
20
57
16
20
6
56
1.61
40928--40993
24
3.0
22
84
8
82
18
18
6
57
1.60
41542--41635
45
2.2
43
88
7
138
37
23
5
34
1.78

Tables:   1

The End!