Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019520.1 Corchorus olitorius cultivar O-4 contig19553, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  6424

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1305--1334
12
2.4
13
94
5
53
23
23
10
43
1.83
2099--2247
75
2.0
76
89
1
228
38
8
20
32
1.84
3081--3126
7
6.9
7
90
5
60
56
0
17
26
1.41
3689--3831
42
3.0
48
82
15
190
34
16
15
33
1.90
4634--4734
47
2.1
47
81
0
121
19
20
22
36
1.95
4747--4798
22
2.4
21
81
9
59
30
19
1
48
1.60
4742--4860
36
3.3
35
85
4
166
31
20
3
44
1.68
4742--4906
14
11.4
14
69
18
58
30
19
4
45
1.69
4844--4900
22
2.6
22
86
5
71
29
15
7
47
1.72
4879--4923
16
2.8
16
89
0
63
31
22
6
40
1.80
4747--4922
8
23.8
8
68
21
57
31
19
4
44
1.71
4910--4999
38
2.4
38
98
0
171
23
21
14
41
1.89
4893--5075
93
2.0
92
85
9
248
23
22
14
39
1.90
5016--5539
71
7.3
71
87
4
657
16
19
22
41
1.90
5006--5539
143
3.7
142
87
6
665
16
19
22
41
1.90
5016--5539
36
14.7
35
85
6
660
16
19
22
41
1.90
5533--5581
8
6.0
8
78
4
53
26
20
6
46
1.73
6029--6064
13
2.8
13
95
0
63
22
16
0
61
1.35

Tables:   1

The End!