Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019523.1 Corchorus olitorius cultivar O-4 contig19556, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  86656

Tables:   1   

This is table  1  of  1  ( 17 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
4023--4100
32
2.4
32
84
0
93
35
16
15
32
1.90
6627--6729
52
2.0
52
96
0
188
44
26
14
14
1.84
7321--7356
6
6.0
6
100
0
72
16
33
0
50
1.46
12756--12809
27
2.0
27
100
0
108
40
11
14
33
1.82
15728--15753
13
2.0
13
100
0
52
38
7
15
38
1.76
19320--19376
30
1.9
30
85
0
78
35
5
7
52
1.51
19781--19814
18
1.9
18
88
5
52
73
2
5
17
1.16
36686--36750
31
2.1
31
94
0
112
35
30
3
30
1.73
37171--37247
33
2.3
33
100
0
154
46
18
5
29
1.70
39685--39709
7
3.6
7
100
0
50
72
0
0
28
0.86
58058--58094
17
2.1
19
90
10
60
21
5
2
70
1.20
58142--58183
2
21.0
2
100
0
84
50
0
0
50
1.00
59578--59618
12
3.6
12
80
9
50
53
2
0
43
1.13
59531--59599
16
4.4
16
72
17
56
53
2
2
40
1.31
60393--60420
2
14.0
2
100
0
56
50
0
0
50
1.00
62525--62559
2
18.0
2
94
5
63
51
0
0
48
1.00
85805--85906
45
2.3
45
94
0
186
25
23
21
29
1.99

Tables:   1

The End!