Tandem Repeats Finder Program written by:
Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019524.1 Corchorus olitorius cultivar O-4 contig19557, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  56046

Tables:   1   

This is table  1  of  1  ( 18 repeats found )

Click on indices to view alignment
Table Explanation

Indices
Period
Size
Copy
Number
Consensus
Size
Percent
Matches
Percent
Indels
Score
A
C
G
T
Entropy
(0-2)
1--352
62
5.5
62
90
5
551
3
39
20
36
1.70
1--352
132
2.8
124
92
3
569
3
39
20
36
1.70
1579--1604
12
2.2
12
100
0
52
23
19
0
57
1.40
2055--2103
25
1.9
26
83
4
64
28
22
16
32
1.95
2122--2221
25
3.8
25
82
8
110
37
20
13
30
1.90
2165--2225
31
2.0
31
100
0
122
36
19
13
31
1.90
2631--2716
45
1.9
45
100
0
172
39
4
27
27
1.76
9871--9917
24
2.0
24
95
0
85
40
8
34
17
1.79
11014--11061
6
7.8
6
93
4
69
87
12
0
0
0.54
11014--11062
22
2.3
20
83
16
64
87
12
0
0
0.54
14095--14125
2
15.5
2
100
0
62
51
0
0
48
1.00
15283--15407
66
1.9
66
91
0
205
19
32
28
20
1.97
15619--15677
24
2.5
24
94
0
100
25
42
10
22
1.84
22542--22683
73
1.9
73
91
2
232
30
16
19
33
1.94
26922--26946
4
6.2
4
100
0
50
76
24
0
0
0.80
27098--27122
12
2.1
12
100
0
50
40
28
8
24
1.83
28799--28875
36
2.1
36
90
4
120
46
15
14
23
1.82
54622--54702
31
2.7
30
82
1
99
38
22
22
17
1.93

Tables:   1

The End!