genome.fa.s19526.2.7.7.80.10.50.1000.1.html

Tandem Repeats Finder Program written by:

Gary Benson
Program in Bioinformatics
Boston University
Version 4.09

Please cite:
G. Benson,
"Tandem repeats finder: a program to analyze DNA sequences"
Nucleic Acid Research(1999)
Vol. 27, No. 2, pp. 573-580.

Sequence: AWUE01019526.1 Corchorus olitorius cultivar O-4 contig19559, whole genome shotgun sequence
Parameters: 2 7 7 80 10 50 1000
Length:  148975

Tables:   1   

This is table  1  of  1  ( 32 repeats found )

Click on indices to view alignment

Table Explanation

Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
900--942	22	2.0	21	86	13	61	58	0	0	41	0.98
4046--4112	32	2.2	30	80	17	77	38	0	43	17	1.50
7435--7579	74	2.0	74	94	0	254	29	14	14	41	1.85
13571--13659	34	2.6	33	82	8	97	43	13	13	29	1.82
15297--15349	27	2.0	27	84	0	70	45	20	7	26	1.78
16861--16985	60	2.1	61	87	1	180	28	12	18	40	1.86
26700--27460	333	2.3	326	79	9	827	35	14	14	35	1.86
27561--28377	330	2.5	331	82	4	905	34	14	14	36	1.87
29021--29101	35	2.3	35	100	0	162	34	6	13	45	1.69
30758--32326	317	5.0	317	76	11	1401	31	14	15	37	1.89
35190--35265	38	2.1	34	76	17	82	23	11	15	48	1.78
37605--39918	329	7.0	332	84	4	2907	32	14	15	36	1.89
48214--48259	19	2.4	19	89	7	67	2	15	0	82	0.76
49104--49152	1	49.0	1	100	0	98	100	0	0	0	0.00
50761--50806	24	1.9	24	82	8	58	26	17	13	43	1.85
55316--55568	105	2.5	99	86	9	336	40	8	9	41	1.68
62268--62363	33	2.9	33	82	0	120	19	30	12	37	1.89
83494--83520	5	5.4	5	100	0	54	81	18	0	0	0.69
90884--90945	19	3.3	19	65	13	56	53	17	8	20	1.69
90878--90955	37	2.1	37	95	0	138	50	16	10	23	1.76
95503--95530	14	2.0	14	100	0	56	35	7	7	50	1.57
107050--107083	17	2.0	17	94	0	59	44	11	8	35	1.72
Indices	Period Size	Copy Number	Consensus Size	Percent Matches	Percent Indels	Score	A	C	G	T	Entropy (0-2)
113548--113572	12	2.1	12	100	0	50	36	0	8	56	1.29
129735--129801	29	2.3	28	80	12	82	20	20	19	38	1.93
131541--131566	3	8.7	3	100	0	52	69	0	30	0	0.89
136796--136866	29	2.4	29	86	4	99	32	16	18	32	1.94
136942--137100	60	2.7	60	85	5	207	30	16	14	38	1.89
136942--137040	31	3.3	31	68	11	87	26	16	17	40	1.90
139871--139959	17	5.2	17	91	5	144	37	21	19	22	1.95
141283--141312	2	15.0	2	100	0	60	50	0	0	50	1.00
141462--141499	20	2.0	20	84	5	51	65	0	23	10	1.23
148542--148571	6	5.2	6	96	4	53	13	0	0	86	0.57

Tables:   1

The End!