Tandem Repeats Finder Program written by:

                 Gary Benson
      Program in Bioinformatics
          Boston University

Version 4.09

Sequence: AWUE01019528.1 Corchorus olitorius cultivar O-4 contig19561, whole genome shotgun sequence

Parameters: 2 7 7 80 10 50 1000

Pmatch=0.80,Pindel=0.10
tuple sizes 0,4,5,7
tuple distances 0, 29, 159, 1000

Length: 9270
ACGTcount: A:0.34, C:0.15, G:0.16, T:0.35


Found at i:4051 original size:52 final size:52

Alignment explanation


    Indices: 3973--4076  Score: 199
    Period size: 52  Copynumber: 2.0  Consensus size: 52

       3963 TTCATTTCAC

                                                                
       3973 TCTACCAGGAAGGAAGCGGACCTAGGGGTTGTGATACGTGATAGTGGAGGAA
          1 TCTACCAGGAAGGAAGCGGACCTAGGGGTTGTGATACGTGATAGTGGAGGAA

                               *                                
       4025 TCTACCAGGAAGGAAGCGGGCCTAGGGGTTGTGATACGTGATAGTGGAGGAA
          1 TCTACCAGGAAGGAAGCGGACCTAGGGGTTGTGATACGTGATAGTGGAGGAA

       4077 ATATTATCGC


Statistics
Matches: 51,  Mismatches: 1, Indels: 0
        0.98            0.02        0.00

Matches are distributed among these distances:
  52   51  1.00

ACGTcount: A:0.28, C:0.13, G:0.39, T:0.19


Consensus pattern (52 bp):   
TCTACCAGGAAGGAAGCGGACCTAGGGGTTGTGATACGTGATAGTGGAGGAA
Done.